| ID | SAVERM_4913
| Type | CDS
|
| From | 5968622
| nt length | 384
|
| To | 5969005
| aa length | 127
|
| Gene | rplL
| pI | 4.24
|
| Definition | putative ribosomal protein L7/L12
| M.W (Da) | 13281
|
| Note | PF00542: Ribosomal protein L7/L12 C-terminal domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4653 50S ribosomal protein L7/L12 | 163 | 7.0e-54
|
| sgr | SGR_2870 50S ribosomal protein L7/L12 | 144 | 2.0e-46
|
| sam | SAM23877_4472 50S ribosomal subunit protein L7/L12 | 162 | 1.0e-53
|
| scab | SCAB37201 putative ribosomal protein L7/L12 | 140 | 8.0e-45
|
| sace | SACE_6867 50S ribosomal protein L7/L12 | 124 | 1.0e-38
|
| nfar | nfa51110 rplL ribosomal protein L7/L12 | 162 | 8.3e-42
|
| mtub | gi|15607792 50S ribosomal protein L7/L12 [Mycobacterium tuberculosis H37Rv] | 158 | 9.4e-41
|
| cglu | gi|19551729 COG0222:Ribosomal protein L7/L12 [Corynebacterium glutamicum] | 137 | 1.6e-34
|
| bsub | BG10726 rplL; 50S ribosomal protein L7/L12 | 132 | 8.5e-33
|
| ecoli | gi|16131816 50S ribosomal protein L7/L12 [Escherichia coli K12] | 114 | 1.5e-27
|
| paer | PA4271 [gene=rplL] [prot=50S ribosomal protein L7 / L12] [comment=PA4271] | 126 | 6.9e-31
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L12 | 1 | Ribosomal protein L7/L12 C-terminal domain | 61-127 | 97.3 | 4.5e-28
|
| Ribosomal_L12_N | 1 | Ribosomal protein L7/L12 dimerisation domain | 7-54 | 63.0 | 1.5e-17
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_164407128.1 | 50S ribosomal protein L7/L12 [Streptomyces sp. SID12488] >gb...
| 287 | 4.7e-31 |
| WP_200683832.1 | 50S ribosomal protein L7/L12 [Streptomyces sp. MBT65] >lcl
| 287 | 4.7e-31 |
| OQR60188.1 | 50S ribosomal protein L7/L12 [Streptomyces sp. B9173]
| 287 | 5.4e-31 |
| WP_057602856.1 | 50S ribosomal protein L7/L12 [Streptomyces sp. Root1310] >gb...
| 287 | 5.5e-31 |
| WP_062640264.1 | 50S ribosomal protein L7/L12 [Streptomyces sp. NBRC 110468]
| 287 | 6.0e-31 |
| WP_171398902.1 | 50S ribosomal protein L7/L12 [Streptomyces asoensis] >gb
| 287 | 6.0e-31 |
| WP_055528985.1 | 50S ribosomal protein L7/L12 [Streptomyces graminilatus]
| 285 | 1.0e-30 |
| WP_006383485.1 | MULTISPECIES: 50S ribosomal protein L7/L12 [Streptomyces] >g...
| 285 | 1.1e-30 |
| WP_053745801.1 | 50S ribosomal protein L7/L12 [Streptomyces sp. NRRL WC-3618]...
| 285 | 1.2e-30 |
| WP_189147766.1 | 50S ribosomal protein L7/L12 [Streptomyces lacrimifluminis] ...
| 285 | 1.2e-30 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have no N-terminal signal seq.
|