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IDSAVERM_4914 TypeCDS
From5969628 nt length3486
To5973113 aa length1161
GenerpoB pI4.58
DefinitionRNA polymerase beta subunit M.W (Da)128297
NotePF00562: RNA polymerase Rpb2, domain 6 AseI frg.I
SignalP v.4.0Non-secretory protein | plot CategoryRNA elongation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4654 DNA-directed RNA polymerase beta chain22670.0e+00
sgrSGR_2869 putative RNA polymerase beta subunit22620.0e+00
samSAM23877_4473 DNA-directed RNA polymerase subunit beta22700.0e+00
scabSCAB37191 RNA polymerase beta subunit22780.0e+00
saceSACE_6854 DNA-directed RNA polymerase, beta subunit18380.0e+00
nfarnfa50990 rpoB RNA polymerase beta subunit17700.0e+00
mtubgi|15607807 DNA-directed RNA polymerase beta subunit [Mycobacterium tuberculosis H37Rv]17590.0e+00
cglugi|19551731 COG0085:DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful) [Corynebacterium glutamicum]16340.0e+00
bsubBG10728 rpoB; DNA-directed RNA polymerase beta chain [EC:2.7.7.6]10360.0e+00
ecoligi|16131817 DNA-directed RNA polymerase beta subunit [Escherichia coli K12]6870.0e+00
paerPA4270 [gene=rpoB] [prot=DNA-directed RNA polymerase beta chain] [comment=PA4270]6730.0e+00

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb2_61RNA polymerase Rpb2, domain 6631-1047518.21.3e-155

RNA_pol_Rpb2_21RNA polymerase Rpb2, domain 2169-365102.91.5e-29

RNA_pol_Rpb2_31RNA polymerase Rpb2, domain 3424-49299.76.8e-29

RNA_pol_Rpb2_71RNA polymerase Rpb2, domain 71049-112395.32e-27

RNA_pol_Rpb2_451RNA polymerase beta subunit external 1 domain502-56890.27.1e-26

RNA_pol_Rpb2_11RNA polymerase beta subunit38-40977.87.1e-22

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_097285835.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. O... 57510.0e+00
WP_067367154.1 DNA-directed RNA polymerase subunit beta [Streptomyces olivo... 57390.0e+00
WP_189190357.1 DNA-directed RNA polymerase subunit beta [Streptomyces albif... 57360.0e+00
WP_095853119.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [uncl... 57330.0e+00
WP_181650355.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. W... 57320.0e+00
WP_148010013.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. m... 57320.0e+00
WP_075028538.1 DNA-directed RNA polymerase subunit beta [Streptomyces mirab... 57300.0e+00
WP_099921153.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 57280.0e+00
WP_153289130.1 DNA-directed RNA polymerase subunit beta [Streptomyces fagop... 57220.0e+00
WP_060901497.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 57220.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1512 Seems to have no N-terminal signal seq.