| ID | SAVERM_4917
| Type | CDS
|
| From | 5978149
| nt length | 372
|
| To | 5978520
| aa length | 123
|
| Gene | rpsL
| pI | 11.78
|
| Definition | ribosomal protein S12
| M.W (Da) | 13771
|
| Note | PF00164: Ribosomal protein S12
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4659 30S ribosomal protein S12 | 247 | 3.0e-87
|
| sgr | SGR_2846 30S ribosomal protein S12 | 247 | 3.0e-87
|
| sam | SAM23877_4478 30S ribosomal protein S12 | 247 | 3.0e-87
|
| scab | SCAB37121 putative ribosomal protein S12 | 247 | 3.0e-87
|
| sace | SACE_6841 30S ribosomal protein S12 | 234 | 4.0e-82
|
| nfar | nfa50780 rpsL ribosomal protein S12 | 227 | 2.0e-61
|
| mtub | gi|15607822 30S ribosomal protein S12 [Mycobacterium tuberculosis H37Rv] | 227 | 2.0e-61
|
| cglu | gi|19551736 COG0048:Ribosomal protein S12 [Corynebacterium glutamicum] | 216 | 2.0e-58
|
| bsub | BG19009 rpsL, strA, fun; 30S ribosomal protein S12 | 182 | 5.1e-48
|
| ecoli | gi|16131221 30S ribosomal protein S12 [Escherichia coli K12] | 189 | 4.7e-50
|
| paer | PA4268 [gene=rpsL] [prot=30S ribosomal protein S12] [comment=PA4268] | 191 | 1.6e-50
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosom_S12_S23 | 1 | Ribosomal protein S12/S23 | 12-123 | 148.0 | 6.8e-44
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_215079459.1 | 30S ribosomal protein S12 [Streptomyces sp. ISL-11] >lcl
| 629 | 3.1e-83 |
| WP_232269874.1 | 30S ribosomal protein S12 [Streptomyces sp. 1_25] >lcl
| 629 | 3.5e-83 |
| WP_128433112.1 | 30S ribosomal protein S12 [Streptomyces cyaneus]
| 627 | 6.4e-83 |
| WP_030422047.1 | MULTISPECIES: 30S ribosomal protein S12 [Streptomyces] >gb
| 627 | 6.8e-83 |
| WP_007823146.1 | MULTISPECIES: 30S ribosomal protein S12 [Actinomycetia] >lcl...
| 627 | 6.8e-83 |
| WP_003974304.1 | MULTISPECIES: 30S ribosomal protein S12 [Streptomyces] >gb
| 627 | 7.2e-83 |
| WP_065757108.1 | 30S ribosomal protein S12 [Streptomyces clavuligerus] >gb
| 626 | 8.4e-83 |
| WP_037627024.1 | MULTISPECIES: 30S ribosomal protein S12 [Streptomyces] >dbj
| 626 | 1.0e-82 |
| WP_203599590.1 | MULTISPECIES: 30S ribosomal protein S12 [unclassified Strept...
| 627 | 1.2e-82 |
| WP_016909650.1 | MULTISPECIES: 30S ribosomal protein S12 [Streptomyces] >gb
| 625 | 1.3e-82 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4991 | Seems to have no N-terminal signal seq.
|