| ID | SAVERM_4926
| Type | CDS
|
| From | 5987464
| nt length | 645
|
| To | 5988108
| aa length | 214
|
| Gene | rplC
| pI | 10.85
|
| Definition | putative ribosomal protein L3
| M.W (Da) | 22714
|
| Note | PF00297: Ribosomal protein L3
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4702 50S ribosomal protein L3 | 403 | 3.0e-146
|
| sgr | SGR_2834 50S ribosomal protein L3 | 416 | 3.0e-151
|
| sam | SAM23877_4498 50S ribosomal subunit protein L3 | 405 | 1.0e-146
|
| scab | SCAB36941 putative ribosomal protein L3 | 427 | 2.0e-155
|
| sace | SACE_6836 50S ribosomal protein L3 | 333 | 2.0e-118
|
| nfar | nfa7330 rplC ribosomal protein L3 | 322 | 1.6e-89
|
| mtub | gi|15607841 50S ribosomal protein L3 [Mycobacterium tuberculosis H37Rv] | 297 | 3.2e-82
|
| cglu | gi|19551746 COG0087:Ribosomal protein L3 [Corynebacterium glutamicum] | 289 | 8.1e-80
|
| bsub | BG11218 rplC; 50S ribosomal protein L3 | 207 | 3.8e-55
|
| ecoli | gi|16131199 50S ribosomal protein L3 [Escherichia coli K12] | 210 | 6.7e-56
|
| paer | PA4263 [gene=rplC] [prot=50S ribosomal protein L3] [comment=PA4263] | 216 | 9.6e-58
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L3 | 1 | Ribosomal protein L3 | 98-186 | 57.4 | 1.1e-15
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3958 | Seems to have no N-terminal signal seq.
|