| ID | SAVERM_4927
| Type | CDS
|
| From | 5988114
| nt length | 666
|
| To | 5988779
| aa length | 221
|
| Gene | rplD
| pI | 10.42
|
| Definition | putative ribosomal protein L4
| M.W (Da) | 23581
|
| Note | PF00573: Ribosomal protein L4/L1 family
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4703 50S ribosomal protein L4 | 389 | 2.0e-140
|
| sgr | SGR_2833 50S ribosomal protein L4 | 372 | 9.0e-134
|
| sam | SAM23877_4499 50S ribosomal protein L4 | 386 | 3.0e-139
|
| scab | SCAB36931 putative ribosomal protein L4 | 381 | 6.0e-137
|
| sace | SACE_6835 50S ribosomal protein L4 | 283 | 3.0e-98
|
| nfar | nfa7340 rplD ribosomal protein L4 | 261 | 4.5e-71
|
| mtub | gi|15607842 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Rv] | 279 | 1.2e-76
|
| cglu | gi|19551747 COG0088:Ribosomal protein L4 [Corynebacterium glutamicum] | 268 | 1.5e-73
|
| bsub | BG11219 rplD; 50S ribosomal protein L4 | 164 | 3.9e-42
|
| ecoli | gi|16131198 50S ribosomal protein L4 [Escherichia coli K12] | 119 | 2.1e-28
|
| paer | PA4262 [gene=rplD] [prot=50S ribosomal protein L4] [comment=PA4262] | 117 | 6.4e-28
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L4 | 1 | Ribosomal protein L4/L1 family | 17-204 | 208.9 | 5.2e-62
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1150 | Seems to have no N-terminal signal seq.
|