| ID | SAVERM_4928
| Type | CDS
|
| From | 5988779
| nt length | 417
|
| To | 5989195
| aa length | 138
|
| Gene | rplW
| pI | 11.18
|
| Definition | putative ribosomal protein L23
| M.W (Da) | 14880
|
| Note | longer N-terminus compared with other bacteria, PF00276: Ribosomal protein L23
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4704 50S ribosomal protein L23 | 218 | 2.0e-75
|
| sgr | SGR_2832 50S ribosomal protein L23 | 185 | 9.0e-63
|
| sam | SAM23877_4500 50S ribosomal protein L23 | 219 | 9.0e-76
|
| scab | SCAB36921 putative ribosomal protein L23 | 204 | 9.0e-70
|
| sace | SACE_6834 50S ribosomal protein L23 | 135 | 6.0e-43
|
| nfar | nfa7350 rplW ribosomal protein L23 | 125 | 1.7e-30
|
| mtub | gi|15607843 50S ribosomal protein L23 [Mycobacterium tuberculosis H37Rv] | 128 | 1.2e-31
|
| cglu | gi|19551748 COG0089:Ribosomal protein L23 [Corynebacterium glutamicum] | 115 | 7.8e-28
|
| bsub | BG11221 rplW; 50S ribosomal protein L23 | 78 | 1.0e-16
|
| ecoli | gi|16131197 50S ribosomal protein L23 [Escherichia coli K12] | 63 | 3.7e-12
|
| paer | PA4261 [gene=rplW] [prot=50S ribosomal protein L23] [comment=PA4261] | 73 | 6.3e-15
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L23 | 1 | Ribosomal protein L23 | 48-133 | 109.0 | 1e-31
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_153289117.1 | 50S ribosomal protein L23 [Streptomyces fagopyri] >gb
| 607 | 2.4e-79 |
| WP_099921128.1 | MULTISPECIES: 50S ribosomal protein L23 [Streptomyces] >lcl
| 606 | 3.6e-79 |
| WP_055513591.1 | MULTISPECIES: 50S ribosomal protein L23 [Streptomyces aurant...
| 606 | 3.8e-79 |
| WP_099500624.1 | MULTISPECIES: 50S ribosomal protein L23 [Streptomyces] >gb
| 600 | 2.4e-78 |
| WP_067367110.1 | MULTISPECIES: 50S ribosomal protein L23 [Streptomyces] >gb
| 599 | 3.3e-78 |
| WP_097285857.1 | MULTISPECIES: 50S ribosomal protein L23 [Streptomyces] >lcl
| 597 | 8.8e-78 |
| WP_107022195.1 | MULTISPECIES: 50S ribosomal protein L23 [Streptomyces] >lcl
| 594 | 2.2e-77 |
| QIY97699.1 | 50S ribosomal protein L23 [Streptomyces sp. S1D4-11]
| 592 | 4.4e-77 |
| WP_189776122.1 | 50S ribosomal protein L23 [Streptomyces tauricus] >dbj
| 591 | 6.7e-77 |
| WP_168529647.1 | 50S ribosomal protein L23 [Streptomyces sp. RPA4-2] >gb
| 590 | 7.9e-77 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1957 | Seems to have no N-terminal signal seq.
|