| ID | SAVERM_4929
| Type | CDS
|
| From | 5989235
| nt length | 837
|
| To | 5990071
| aa length | 278
|
| Gene | rplB
| pI | 11.92
|
| Definition | putative ribosomal protein L2
| M.W (Da) | 30376
|
| Note | PF03947: Ribosomal Proteins L2, C-terminal domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4705 50S ribosomal protein L2 | 524 | 0.0e+00
|
| sgr | SGR_2831 50S ribosomal protein L2 | 514 | 0.0e+00
|
| sam | SAM23877_4501 50S ribosomal subunit protein L2 | 524 | 0.0e+00
|
| scab | SCAB36911 putative ribosomal protein L2 | 524 | 0.0e+00
|
| sace | SACE_6833 50S ribosomal protein L2 | 425 | 1.0e-152
|
| nfar | nfa7360 rplB ribosomal protein L2 | 473 | 8.0e-135
|
| mtub | gi|15607844 50S ribosomal protein L2 [Mycobacterium tuberculosis H37Rv] | 470 | 5.2e-134
|
| cglu | gi|19551749 COG0090:Ribosomal protein L2 [Corynebacterium glutamicum] | 446 | 7.4e-127
|
| bsub | BG11217 rplB; 50S ribosomal protein L2 | 353 | 8.2e-99
|
| ecoli | gi|16131196 50S ribosomal protein L2 [Escherichia coli K12] | 318 | 2.5e-88
|
| paer | PA4260 [gene=rplB] [prot=50S ribosomal protein L2] [comment=PA4260] | 332 | 3.0e-92
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L2_C | 1 | Ribosomal Proteins L2, C-terminal domain | 126-251 | 187.6 | 7.6e-56
|
| Ribosomal_L2 | 1 | Ribosomal Proteins L2, RNA binding domain | 42-118 | 111.6 | 1.2e-32
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2147 | Seems to have no N-terminal signal seq.
|