| ID | SAVERM_4930
| Type | CDS
|
| From | 5990084
| nt length | 282
|
| To | 5990365
| aa length | 93
|
| Gene | rpsS
| pI | 11.52
|
| Definition | putative ribosomal protein S19
| M.W (Da) | 10543
|
| Note | PF00203: Ribosomal protein S19
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4706 30S ribosomal protein S19 | 187 | 1.0e-64
|
| sgr | SGR_2830 30S ribosomal protein S19 | 182 | 2.0e-62
|
| sam | SAM23877_4502 30S ribosomal protein S19 | 187 | 1.0e-64
|
| scab | SCAB36901 putative ribosomal protein S19 | 185 | 1.0e-63
|
| sace | SACE_6832 30S ribosomal protein S19 | 165 | 1.0e-55
|
| nfar | nfa7370 rpsS ribosomal protein S19 | 155 | 4.9e-40
|
| mtub | gi|15607845 30S ribosomal protein S19 [Mycobacterium tuberculosis H37Rv] | 164 | 1.4e-42
|
| cglu | gi|19551750 COG0185:Ribosomal protein S19 [Corynebacterium glutamicum] | 154 | 7.4e-40
|
| bsub | BG19011 rpsS; 30S ribosomal protein S19 | 136 | 2.0e-34
|
| ecoli | gi|16131195 30S ribosomal protein S19 [Escherichia coli K12] | 134 | 8.9e-34
|
| paer | PA4259 [gene=rpsS] [prot=30S ribosomal protein S19] [comment=PA4259] | 127 | 1.5e-31
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S19 | 1 | Ribosomal protein S19 | 3-83 | 126.3 | 2.9e-37
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_007384069.1 | MULTISPECIES: 30S ribosomal protein S19 [Streptomyces] >gb
| 483 | 8.3e-62 |
| WP_215183662.1 | 30S ribosomal protein S19 [Streptomyces sp. ISL-10] >lcl
| 482 | 1.1e-61 |
| WP_033528345.1 | MULTISPECIES: 30S ribosomal protein S19 [Streptomyces] >lcl
| 481 | 1.3e-61 |
| WP_057607913.1 | MULTISPECIES: 30S ribosomal protein S19 [Streptomyces] >gb
| 481 | 1.3e-61 |
| WP_019888752.1 | MULTISPECIES: 30S ribosomal protein S19 [Streptomyces] >gb
| 480 | 2.0e-61 |
| WP_010036728.1 | MULTISPECIES: 30S ribosomal protein S19 [Streptomyces] >gb
| 480 | 2.0e-61 |
| WP_166628878.1 | MULTISPECIES: 30S ribosomal protein S19 [Streptomyces] >lcl
| 480 | 2.0e-61 |
| WP_134040824.1 | 30S ribosomal protein S19 [Streptomyces bluensis] >dbj
| 480 | 2.2e-61 |
| WP_095748093.1 | MULTISPECIES: 30S ribosomal protein S19 [Streptomyces] >dbj
| 480 | 2.2e-61 |
| WP_018543910.1 | MULTISPECIES: 30S ribosomal protein S19 [unclassified Strept...
| 479 | 2.4e-61 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2658 | Seems to have no N-terminal signal seq.
|