| ID | SAVERM_4931
| Type | CDS
|
| From | 5990408
| nt length | 348
|
| To | 5990755
| aa length | 115
|
| Gene | rplV
| pI | 10.98
|
| Definition | putative ribosomal protein L22
| M.W (Da) | 12795
|
| Note | PF00237: Ribosomal protein L22p/L17e
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4707 50S ribosomal protein L22 | 233 | 6.0e-82
|
| sgr | SGR_2829 50S ribosomal protein L22 | 228 | 7.0e-80
|
| sam | SAM23877_4503 50S ribosomal subunit protein L22 | 232 | 1.0e-81
|
| scab | SCAB36891 putative ribosomal protein L22 | 227 | 1.0e-79
|
| sace | SACE_6831 50S ribosomal protein L22 | 155 | 3.0e-51
|
| nfar | nfa7380 rplV ribosomal protein L22 | 137 | 2.3e-34
|
| mtub | gi|15607846 50S ribosomal protein L22 [Mycobacterium tuberculosis H37Rv] | 127 | 1.9e-31
|
| cglu | gi|19551751 COG0091:Ribosomal protein L22 [Corynebacterium glutamicum] | 138 | 7.9e-35
|
| bsub | BG11078 rplV; 50S ribosomal protein L22 | 134 | 1.4e-33
|
| ecoli | gi|16131194 50S ribosomal protein L22 [Escherichia coli K12] | 107 | 2.0e-25
|
| paer | PA4258 [gene=rplV] [prot=50S ribosomal protein L22] [comment=PA4258] | 91 | 1.5e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L22 | 1 | Ribosomal protein L22p/L17e | 5-108 | 124.7 | 1.5e-36
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| CAB82075.1 | 50S ribosomal protein L22 [Streptomyces coelicolor A3(2)]
| 595 | 4.4e-78 |
| NHI07779.1 | ...
| 594 | 5.4e-78 |
| OLZ62042.1 | 50S ribosomal protein L22 [Streptomyces sp. IMTB 2501]
| 592 | 1.4e-77 |
| WP_023547379.1 | MULTISPECIES: 50S ribosomal protein L22 [Streptomyces] >gb
| 590 | 1.5e-77 |
| GGS94309.1 | 50S ribosomal protein L22 [Streptomyces griseoviridis] >dbj
| 590 | 2.1e-77 |
| EFE67685.1 | 50S ribosomal protein L22 [Streptomyces viridosporus ATCC 14672]
| 590 | 2.1e-77 |
| EFL39700.1 | 50S ribosomal protein L22 [Streptomyces griseoflavus Tu4000]
| 590 | 2.3e-77 |
| WP_217787114.1 | 50S ribosomal protein L22 [Streptomyces sp. J2-1] >lcl
| 589 | 2.5e-77 |
| ATL84681.1 | 50S ribosomal protein L22 [Streptomyces malaysiensis] >gb
| 591 | 2.5e-77 |
|
| 590 | 2.6e-77 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0627 | Seems to have no N-terminal signal seq.
|