| ID | SAVERM_4932
| Type | CDS
|
| From | 5990755
| nt length | 828
|
| To | 5991582
| aa length | 275
|
| Gene | rpsC
| pI | 11.07
|
| Definition | putative ribosomal protein S3
| M.W (Da) | 30061
|
| Note | PF00189: Ribosomal protein S3, C-terminal domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4708 30S ribosomal protein S3 | 461 | 8.0e-167
|
| sgr | SGR_2828 30S ribosomal protein S3 | 477 | 3.0e-173
|
| sam | SAM23877_4504 30S ribosomal subunit protein S3 | 474 | 4.0e-172
|
| scab | SCAB36881 putative ribosomal protein S3 | 477 | 3.0e-173
|
| sace | SACE_6830 30S ribosomal protein S3 | 370 | 1.0e-130
|
| nfar | nfa7390 rpsC ribosomal protein S3 | 377 | 4.5e-106
|
| mtub | gi|15607847 30S ribosomal protein S3 [Mycobacterium tuberculosis H37Rv] | 374 | 5.0e-105
|
| cglu | gi|19551752 COG0092:Ribosomal protein S3 [Corynebacterium glutamicum] | 329 | 9.9e-92
|
| bsub | BG19005 rpsC; 30S ribosomal protein S3 | 243 | 9.0e-66
|
| ecoli | gi|16131193 30S ribosomal protein S3 [Escherichia coli K12] | 229 | 1.2e-61
|
| paer | PA4257 [gene=rpsC] [prot=30S ribosomal protein S3] [comment=PA4257] | 243 | 1.1e-65
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S3_C | 1 | Ribosomal protein S3, C-terminal domain | 119-201 | 127.3 | 2.3e-37
|
| KH_2 | 1 | KH domain | 38-109 | 67.7 | 5.4e-19
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3155 | Seems to have no N-terminal signal seq.
|