| ID | SAVERM_4933
| Type | CDS
|
| From | 5991589
| nt length | 420
|
| To | 5992008
| aa length | 139
|
| Gene | rplP
| pI | 11.62
|
| Definition | putative ribosomal protein L16
| M.W (Da) | 15856
|
| Note | PF00252: Ribosomal protein L16
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4709 50S ribosomal protein L16 | 282 | 2.0e-100
|
| sgr | SGR_2827 50S ribosomal protein L16 | 273 | 4.0e-97
|
| sam | SAM23877_4505 50S ribosomal subunit protein L16 | 282 | 1.0e-100
|
| scab | SCAB36871 putative ribosomal protein L16 | 282 | 2.0e-100
|
| sace | SACE_6829 50S ribosomal protein L16 | 233 | 4.0e-81
|
| nfar | nfa7400 rplP ribosomal protein L16 | 250 | 3.6e-68
|
| mtub | gi|15607848 50S ribosomal protein L16 [Mycobacterium tuberculosis H37Rv] | 237 | 2.5e-64
|
| cglu | gi|19551753 COG0197:Ribosomal protein L16/L10E [Corynebacterium glutamicum] | 204 | 9.9e-55
|
| bsub | BG10755 rplP; 50S ribosomal protein L16 | 191 | 1.4e-50
|
| ecoli | gi|16131192 50S ribosomal protein L16 [Escherichia coli K12] | 141 | 1.4e-35
|
| paer | PA4256 [gene=rplP] [prot=50S ribosomal protein L16] [comment=PA4256] | 153 | 4.9e-39
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L16 | 1 | Ribosomal protein L16p/L10e | 4-132 | 162.2 | 5.4e-48
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099500627.1 | MULTISPECIES: 50S ribosomal protein L16 [Streptomyces] >gb
| 729 | 7.0e-98 |
| WP_037626991.1 | 50S ribosomal protein L16 [Streptomyces aureus]
| 728 | 9.7e-98 |
| WP_153289114.1 | 50S ribosomal protein L16 [Streptomyces fagopyri] >gb
| 726 | 1.6e-97 |
| WP_161182738.1 | 50S ribosomal protein L16 [Streptomyces sp. SID4985] >gb
| 726 | 1.6e-97 |
| WP_028805743.1 | MULTISPECIES: 50S ribosomal protein L16 [unclassified Strept...
| 725 | 2.3e-97 |
| WP_055614924.1 | MULTISPECIES: 50S ribosomal protein L16 [Streptomyces] >gb
| 725 | 2.7e-97 |
| WP_093627311.1 | 50S ribosomal protein L16 [Streptomyces sp. 3213.3] >emb
| 724 | 3.2e-97 |
| WP_006140905.1 | MULTISPECIES: 50S ribosomal protein L16 [Streptomyces] >gb
| 724 | 3.4e-97 |
| WP_004927269.1 | MULTISPECIES: 50S ribosomal protein L16 [Streptomyces] >lcl
| 721 | 1.1e-96 |
| WP_003974260.1 | MULTISPECIES: 50S ribosomal protein L16 [Streptomyces] >sp
| 721 | 1.2e-96 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3778 | Seems to have no N-terminal signal seq.
|