| ID | SAVERM_4937
| Type | CDS
|
| From | 5992991
| nt length | 324
|
| To | 5993314
| aa length | 107
|
| Gene | rplX
| pI | 10.6
|
| Definition | putative ribosomal protein L24
| M.W (Da) | 11509
|
| Note | PF00467: KOW motif
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4713 50S ribosomal protein L24 | 199 | 9.0e-69
|
| sgr | SGR_2823 50S ribosomal protein L24 | 191 | 1.0e-65
|
| sam | SAM23877_4509 50S ribosomal subunit protein L24 | 199 | 8.0e-69
|
| scab | SCAB36831 putative ribosomal protein L24 | 195 | 5.0e-67
|
| sace | SACE_6825 50S ribosomal protein L24 | 130 | 1.0e-41
|
| nfar | nfa7750 rplX ribosomal protein L24 | 130 | 1.6e-32
|
| mtub | gi|15607855 50S ribosomal protein L24 [Mycobacterium tuberculosis H37Rv] | 130 | 2.5e-32
|
| cglu | gi|19551759 COG0198:Ribosomal protein L24 [Corynebacterium glutamicum] | 131 | 6.2e-33
|
| bsub | BG10759 rplX; 50S ribosomal protein L24 | 114 | 9.4e-28
|
| ecoli | gi|16131188 50S ribosomal protein L24 [Escherichia coli K12] | 79 | 4.9e-17
|
| paer | PA4252 [gene=rplX] [prot=50S ribosomal protein L24] [comment=PA4252] | 86 | 2.8e-19
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ribosomal_L24 | 1 | Ribosomal proteins 50S L24/mitochondrial 39S L24 | 38-107 | 82.2 | 2.4e-23
|
| KOW | 1 | KOW motif | 5-36 | 31.8 | 8.7e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_060901494.1 | MULTISPECIES: 50S ribosomal protein L24 [unclassified Strept...
| 528 | 3.1e-68 |
| WP_153289113.1 | 50S ribosomal protein L24 [Streptomyces fagopyri] >gb
| 526 | 5.5e-68 |
| WP_067367101.1 | MULTISPECIES: 50S ribosomal protein L24 [Streptomyces] >gb
| 526 | 5.5e-68 |
| WP_168529657.1 | 50S ribosomal protein L24 [Streptomyces sp. RPA4-2] >gb
| 525 | 6.9e-68 |
| WP_143608972.1 | MULTISPECIES: 50S ribosomal protein L24 [unclassified Strept...
| 524 | 1.1e-67 |
| WP_019072281.1 | MULTISPECIES: 50S ribosomal protein L24 [Streptomyces] >lcl
| 523 | 1.6e-67 |
| WP_018543913.1 | MULTISPECIES: 50S ribosomal protein L24 [Streptomyces] >gb
| 522 | 2.0e-67 |
| WP_192229674.1 | 50S ribosomal protein L24 [Streptomyces sp. H28] >lcl
| 521 | 2.6e-67 |
| WP_016645174.1 | MULTISPECIES: 50S ribosomal protein L24 [Streptomyces] >gb
| 521 | 3.2e-67 |
| WP_030046380.1 | MULTISPECIES: 50S ribosomal protein L24 [Streptomyces] >gb
| 520 | 5.2e-67 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3048 | Seems to have no N-terminal signal seq.
|