| ID | SAVERM_4940
| Type | CDS
|
| From | 5994274
| nt length | 399
|
| To | 5994672
| aa length | 132
|
| Gene | rpsH
| pI | 10.34
|
| Definition | putative ribosomal protein S8
| M.W (Da) | 14308
|
| Note | PF00410: Ribosomal protein S8
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4716 30S ribosomal protein S8 | 260 | 4.0e-92
|
| sgr | SGR_2820 30S ribosomal protein S8 | 261 | 2.0e-92
|
| sam | SAM23877_4512 30S ribosomal subunit protein S8 | 261 | 9.0e-93
|
| scab | SCAB36801 putative ribosomal protein S8 | 261 | 2.0e-92
|
| sace | SACE_6822 30S ribosomal protein S8 | 222 | 5.0e-77
|
| nfar | nfa7880 rpsH ribosomal protein S8 | 217 | 3.1e-58
|
| mtub | gi|15607858 30S ribosomal protein S8 [Mycobacterium tuberculosis H37Rv] | 214 | 2.1e-57
|
| cglu | gi|19551774 COG0096:Ribosomal protein S8 [Corynebacterium glutamicum] | 202 | 3.4e-54
|
| bsub | BG10762 rpsH; 30S ribosomal protein S8 | 157 | 2.0e-40
|
| ecoli | gi|16131185 30S ribosomal protein S8 [Escherichia coli K12] | 124 | 1.6e-30
|
| paer | PA4249 [gene=rpsH] [prot=30S ribosomal protein S8] [comment=PA4249] | 121 | 1.8e-29
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S8 | 1 | Ribosomal protein S8 | 5-132 | 166.7 | 2e-49
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_043443042.1 | MULTISPECIES: 30S ribosomal protein S8 [Streptomyces] >gb
| 686 | 1.3e-91 |
| GCB46767.1 | SSU ribosomal protein S8p [Streptomyces sp. NL15-2K]
| 687 | 1.5e-91 |
| WP_015658459.1 | MULTISPECIES: 30S ribosomal protein S8 [Streptomyces] >gb
| 685 | 2.0e-91 |
| WP_190037509.1 | 30S ribosomal protein S8 [Streptomyces fructofermentans] >db...
| 684 | 2.6e-91 |
| WP_006130772.1 | MULTISPECIES: 30S ribosomal protein S8 [Streptomyces] >lcl
| 684 | 2.6e-91 |
| GEC04912.1 | 30S ribosomal protein S8 [Streptomyces spinoverrucosus] >dbj
| 684 | 3.9e-91 |
| EST31199.1 | 30S ribosomal protein S8 [Streptomyces roseochromogenus subsp. os...
| 684 | 4.7e-91 |
| WP_129799270.1 | MULTISPECIES: 30S ribosomal protein S8 [Streptomyces] >lcl
| 682 | 4.8e-91 |
| WP_037887001.1 | MULTISPECIES: 30S ribosomal protein S8 [Streptomyces] >gb
| 682 | 5.8e-91 |
| WP_004984520.1 | MULTISPECIES: 30S ribosomal protein S8 [Streptomyces] >gb
| 682 | 6.3e-91 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1086 | Seems to have no N-terminal signal seq.
|