| ID | SAVERM_4941
| Type | CDS
|
| From | 5994697
| nt length | 540
|
| To | 5995236
| aa length | 179
|
| Gene | rplF
| pI | 10.58
|
| Definition | putative ribosomal protein L6
| M.W (Da) | 19217
|
| Note | PF00347: Ribosomal protein L6
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4717 50S ribosomal protein L6 | 335 | 2.0e-120
|
| sgr | SGR_2819 50S ribosomal protein L6 | 325 | 2.0e-116
|
| sam | SAM23877_4513 50S ribosomal subunit protein L6 | 337 | 4.0e-121
|
| scab | SCAB36791 putative ribosomal protein L6 | 337 | 5.0e-121
|
| sace | SACE_6821 50S ribosomal protein L6 | 254 | 3.0e-88
|
| nfar | nfa7890 rplF ribosomal protein L6 | 276 | 9.8e-76
|
| mtub | gi|15607859 50S ribosomal protein L6 [Mycobacterium tuberculosis H37Rv] | 275 | 1.7e-75
|
| cglu | gi|19551775 COG0097:Ribosomal protein L6P/L9E [Corynebacterium glutamicum] | 236 | 6.2e-64
|
| bsub | BG11408 rplF; 50S ribosomal protein L6 | 184 | 3.4e-48
|
| ecoli | gi|16131184 50S ribosomal protein L6 [Escherichia coli K12] | 152 | 1.3e-38
|
| paer | PA4248 [gene=rplF] [prot=50S ribosomal protein L6] [comment=PA4248] | 161 | 3.6e-41
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L6 | 2 | Ribosomal protein L6 | 11-83, 92-165 | 141.7 | 7.8e-42
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099500630.1 | MULTISPECIES: 50S ribosomal protein L6 [Streptomyces] >gb
| 901 | 8.8e-123 |
| WP_101400121.1 | MULTISPECIES: 50S ribosomal protein L6 [Streptomyces] >gb
| 900 | 9.5e-123 |
| WP_151482626.1 | 50S ribosomal protein L6 [Streptomyces albicerus]
| 899 | 1.4e-122 |
| WP_189190332.1 | 50S ribosomal protein L6 [Streptomyces albiflavescens] >dbj
| 895 | 7.2e-122 |
| WP_067367096.1 | MULTISPECIES: 50S ribosomal protein L6 [Streptomyces] >lcl
| 894 | 9.4e-122 |
| WP_143642847.1 | 50S ribosomal protein L6 [Streptomyces sp. IB201691-2A2] >lc...
| 892 | 1.6e-121 |
| WP_095936048.1 | 50S ribosomal protein L6 [Streptomyces sp. Tue6028] >gb
| 892 | 1.9e-121 |
| WP_221353024.1 | 50S ribosomal protein L6 [Streptomyces sp. REN17]
| 891 | 2.9e-121 |
| WP_028805747.1 | 50S ribosomal protein L6 [Streptomyces sp. 142MFCol3.1]
| 889 | 4.3e-121 |
| WP_189776124.1 | 50S ribosomal protein L6 [Streptomyces tauricus] >dbj
| 889 | 4.7e-121 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1201 | Seems to have no N-terminal signal seq.
|