| ID | SAVERM_4942
| Type | CDS
|
| From | 5995240
| nt length | 384
|
| To | 5995623
| aa length | 127
|
| Gene | rplR
| pI | 11.26
|
| Definition | putative ribosomal protein L18
| M.W (Da) | 13505
|
| Note | PF00861: Ribosomal L18p/L5e family
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4718 50S ribosomal protein L18 | 215 | 2.0e-74
|
| sgr | SGR_2818 50S ribosomal protein L18 | 210 | 1.0e-72
|
| sam | SAM23877_4514 50S ribosomal subunit protein L18 | 215 | 2.0e-74
|
| scab | SCAB36781 putative ribosomal protein L18 | 204 | 6.0e-70
|
| sace | SACE_6820 50S ribosomal protein L18 | 150 | 5.0e-49
|
| nfar | nfa7900 rplR ribosomal protein L18 | 146 | 4.7e-37
|
| mtub | gi|15607860 50S ribosomal protein L18 [Mycobacterium tuberculosis H37Rv] | 138 | 1.3e-34
|
| cglu | gi|19551776 COG0256:Ribosomal protein L18 [Corynebacterium glutamicum] | 145 | 6.0e-37
|
| bsub | BG11409 rplR; 50S ribosomal protein L18 | 127 | 2.1e-31
|
| ecoli | gi|16131183 50S ribosomal protein L18 [Escherichia coli K12] | 80 | 4.2e-17
|
| paer | PA4247 [gene=rplR] [prot=50S ribosomal protein L18] [comment=PA4247] | 99 | 9.0e-23
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L18p | 1 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | 13-127 | 169.2 | 3.4e-50
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_149511967.1 | MULTISPECIES: 50S ribosomal protein L18 [Streptomyces] >lcl
| 448 | 2.0e-55 |
| WP_081218896.1 | MULTISPECIES: 50S ribosomal protein L18 [unclassified Strept...
| 447 | 2.2e-55 |
| WP_143602623.1 | MULTISPECIES: 50S ribosomal protein L18 [unclassified Strept...
| 446 | 3.2e-55 |
| WP_103549188.1 | MULTISPECIES: 50S ribosomal protein L18 [Streptomyces] >lcl
| 445 | 5.1e-55 |
| WP_099500631.1 | MULTISPECIES: 50S ribosomal protein L18 [Streptomyces] >gb
| 444 | 6.8e-55 |
| WP_067367094.1 | MULTISPECIES: 50S ribosomal protein L18 [Streptomyces] >lcl
| 443 | 9.0e-55 |
| WP_107022201.1 | MULTISPECIES: 50S ribosomal protein L18 [Streptomyces] >lcl
| 443 | 1.2e-54 |
| WP_019055526.1 | MULTISPECIES: 50S ribosomal protein L18 [Streptomyces] >lcl
| 442 | 1.4e-54 |
| WP_037626978.1 | 50S ribosomal protein L18 [Streptomyces aureus]
| 441 | 2.0e-54 |
| WP_189190331.1 | 50S ribosomal protein L18 [Streptomyces albiflavescens] >dbj...
| 441 | 2.2e-54 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4676 | Seems to have no N-terminal signal seq.
|