| ID | SAVERM_4949
| Type | CDS
|
| From | 6000287
| nt length | 222
|
| To | 6000508
| aa length | 73
|
| Gene | infA1
| pI | 9.88
|
| Definition | putative translation initiation factor IF-1
| M.W (Da) | 8410
|
| Note | PF00575: S1 RNA binding domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | initiation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4725 translational initiation factor IF1 | 151 | 8.0e-51
|
| sgr | SGR_2811 translation initiation factor IF-1 | 149 | 6.0e-50
|
| sam | SAM23877_4521 protein chain initiation factor IF-1 | 151 | 8.0e-51
|
| scab | SCAB36711 putative translation initiation factor IF-1 | 151 | 1.0e-50
|
| sace | SACE_6808 translation initiation factor IF1 | 111 | 2.0e-35
|
| nfar | nfa8320 infA translation initiation factor IF-1 | 132 | 6.3e-33
|
| mtub | gi|15610598 translation initiation factor IF-1 [Mycobacterium tuberculosis H37Rv] | 132 | 5.7e-33
|
| cglu | gi|19551795 COG0361:Translation initiation factor IF-1 [Corynebacterium glutamicum] | 128 | 4.7e-32
|
| bsub | BG11043 infA; translation initiation factor IF-1 | 120 | 1.3e-29
|
| ecoli | gi|16128851 translation initiation factor IF-1 [Escherichia coli K12] | 99 | 3.2e-23
|
| paer | PA2619 [gene=infA] [prot=initiation factor] [comment=PA2619] | 99 | 4.7e-23
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| eIF-1a | 1 | Translation initiation factor 1A / IF-1 | 8-71 | 100.3 | 3.5e-29
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_030262853.1 | MULTISPECIES: translation initiation factor IF-1 [Streptomyc...
| 380 | 9.6e-47 |
| WP_197972804.1 | translation initiation factor IF-1 [Streptomyces sp. N502]
| 380 | 1.4e-46 |
| WP_004927214.1 | MULTISPECIES: translation initiation factor IF-1 [Streptomyc...
| 378 | 2.0e-46 |
| WP_206345328.1 | translation initiation factor IF-1 [Streptomyces thermoviola...
| 379 | 2.1e-46 |
| WP_233864944.1 | translation initiation factor IF-1 [Streptomyces sp. ST2-7A]...
| 377 | 2.5e-46 |
| WP_229378686.1 | translation initiation factor IF-1 [Streptomyces sp. VRA16 M...
| 378 | 2.6e-46 |
| WP_236052980.1 | translation initiation factor IF-1 [Streptomyces musisoli]
| 378 | 2.9e-46 |
| WP_210429847.1 | translation initiation factor IF-1 [Streptomyces physcomitri...
| 378 | 2.9e-46 |
| WP_202454609.1 | translation initiation factor IF-1 [Streptomyces sp. SID8367...
| 378 | 3.0e-46 |
| AQA16481.1 | translation initiation factor IF-1 [Streptomyces autolyticus] >gb...
| 378 | 3.0e-46 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3098 | Seems to have no N-terminal signal seq.
|