| ID | SAVERM_4950
| Type | CDS
|
| From | 6000568
| nt length | 114
|
| To | 6000681
| aa length | 37
|
| Gene | rpmJ
| pI | 11.65
|
| Definition | putative ribosomal protein L36
| M.W (Da) | 4401
|
| Note | PF00444: Ribosomal protein L36
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4726 50S ribosomal protein L36 | 74 | 2.0e-21
|
| sgr | SGR_2810 50S ribosomal protein L36 | 70 | 8.0e-20
|
| scab | SCAB36701 putative ribosomal protein L36 | 73 | 7.0e-21
|
| sace | SACE_6807 50S ribosomal protein L36 | 67 | 1.0e-18
|
| nfar | nfa8330 rpmJ ribosomal protein L36 | 74 | 1.3e-15
|
| mtub | gi|15610597 50S ribosomal protein L36 [Mycobacterium tuberculosis H37Rv] | 73 | 3.2e-15
|
| bsub | BG11042 rpmJ, rpmX; 50S ribosomal protein L36 | 68 | 8.5e-14
|
| ecoli | gi|16131178 50S ribosomal protein L36 [Escherichia coli K12] | 50 | 2.9e-08
|
| paer | PA4242 [gene=rpmJ] [prot=50S ribosomal protein L36] [comment=PA4242] | 53 | 4.3e-09
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L36 | 1 | Ribosomal protein L36 | 1-37 | 68.8 | 3.1e-19
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| GHI47913.1 | hypothetical protein ScoT_40870 [Streptomyces albidoflavus]
| 187 | 4.4e-18 |
| GGX31896.1 | hypothetical protein GCM10010297_61740 [Streptomyces malachitofu...
| 185 | 6.2e-18 |
| GGP90542.1 | hypothetical protein GCM10010266_11470 [Streptomyces griseomycin...
| 185 | 7.0e-18 |
| GGX61791.1 | hypothetical protein GCM10010358_15160 [Streptomyces minutiscler...
| 184 | 1.0e-17 |
| GGQ06390.1 | hypothetical protein GCM10010279_12100 [Streptomyces mutabilis]
| 183 | 1.3e-17 |
| ERS38049.1 | 50S ribosomal protein L36 [Propionibacterium sp. KPL1838] >gb
| 185 | 1.3e-17 |
| WP_003948619.1 | MULTISPECIES: 50S ribosomal protein L36 [Streptomyces] >lcl
| 180 | 2.4e-17 |
| WP_190049852.1 | 50S ribosomal protein L36 [Streptomyces lomondensis] >lcl
| 180 | 2.4e-17 |
| GHE54187.1 | hypothetical protein GCM10014715_03910 [Streptomyces spiralis]
| 181 | 2.6e-17 |
| GHA50293.1 | hypothetical protein GCM10010372_57680 [Streptomyces tauricus]
| 181 | 2.7e-17 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2940 | Seems to have no N-terminal signal seq.
|