| ID | SAVERM_4951
| Type | CDS
|
| From | 6000885
| nt length | 381
|
| To | 6001265
| aa length | 126
|
| Gene | rpsM
| pI | 11.49
|
| Definition | putative ribosomal protein S13
| M.W (Da) | 14365
|
| Note | PF00416: Ribosomal protein S13/S18
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4727 30S ribosomal protein S13 | 234 | 3.0e-82
|
| sgr | SGR_2809 30S ribosomal protein S13 | 228 | 1.0e-79
|
| sam | SAM23877_4522 30S ribosomal subunit protein S13 | 234 | 3.0e-82
|
| scab | SCAB36691 putative ribosomal protein S13 | 237 | 4.0e-83
|
| sace | SACE_6806 30S ribosomal protein S13 | 163 | 5.0e-54
|
| nfar | nfa8340 rpsM ribosomal protein S13 | 184 | 1.5e-48
|
| mtub | gi|15610596 30S ribosomal protein S13 [Mycobacterium tuberculosis H37Rv] | 190 | 2.9e-50
|
| cglu | gi|19551796 COG0099:Ribosomal protein S13 [Corynebacterium glutamicum] | 174 | 1.2e-45
|
| bsub | BG10730 rpsM; 30S ribosomal protein S13 | 165 | 8.9e-43
|
| ecoli | gi|16131177 30S ribosomal protein S13 [Escherichia coli K12] | 129 | 8.0e-32
|
| paer | PA4241 [gene=rpsM] [prot=30S ribosomal protein S13] [comment=PA4241] | 144 | 3.1e-36
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S13 | 1 | Ribosomal protein S13/S18 | 3-109 | 113.4 | 8.5e-33
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_165264391.1 | 30S ribosomal protein S13 [Streptomyces scabichelini] >gb
| 643 | 2.9e-85 |
| WP_107022207.1 | MULTISPECIES: 30S ribosomal protein S13 [Streptomyces] >lcl
| 641 | 5.3e-85 |
| WP_052580758.1 | 30S ribosomal protein S13 [Streptomyces polyasparticus] >lcl...
| 640 | 9.8e-85 |
| WP_055513621.1 | MULTISPECIES: 30S ribosomal protein S13 [Streptomyces] >lcl
| 638 | 1.9e-84 |
| WP_119102568.1 | MULTISPECIES: 30S ribosomal protein S13 [Streptomyces] >gb
| 636 | 3.6e-84 |
| WP_093613773.1 | 30S ribosomal protein S13 [Streptomyces indicus] >emb
| 632 | 1.2e-83 |
| WP_190037517.1 | 30S ribosomal protein S13 [Streptomyces fructofermentans] >d...
| 632 | 1.4e-83 |
| WP_073792860.1 | MULTISPECIES: 30S ribosomal protein S13 [Streptomyces] >gb
| 630 | 3.0e-83 |
| WP_176102269.1 | 30S ribosomal protein S13 [Streptomyces sp. NA04227] >gb
| 630 | 3.3e-83 |
| WP_033319652.1 | MULTISPECIES: 30S ribosomal protein S13 [Streptomyces] >dbj
| 627 | 8.2e-83 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1286 | Seems to have no N-terminal signal seq.
|