| ID | SAVERM_4954
| Type | CDS
|
| From | 6003114
| nt length | 504
|
| To | 6003617
| aa length | 167
|
| Gene | rplQ
| pI | 10.1
|
| Definition | putative ribosomal protein L17
| M.W (Da) | 18151
|
| Note | PF01196: Ribosomal protein L17
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4730 50S ribosomal protein L17 | 299 | 2.0e-106
|
| sgr | SGR_2806 50S ribosomal protein L17 | 273 | 3.0e-96
|
| sam | SAM23877_4525 50S ribosomal protein L17 | 296 | 2.0e-105
|
| scab | SCAB36661 putative ribosomal protein L17 | 296 | 3.0e-105
|
| sace | SACE_6802 50S ribosomal protein L17 | 189 | 1.0e-62
|
| nfar | nfa8380 rplQ ribosomal protein L17 | 192 | 1.3e-50
|
| mtub | gi|15610592 50S ribosomal protein L17 [Mycobacterium tuberculosis H37Rv] | 192 | 7.5e-51
|
| cglu | gi|19551800 COG0203:Ribosomal protein L17 [Corynebacterium glutamicum] | 176 | 4.0e-46
|
| bsub | BG11041 rplQ; 50S ribosomal protein L17 | 101 | 2.0e-23
|
| ecoli | gi|16131173 50S ribosomal protein L17 [Escherichia coli K12] | 99 | 8.6e-23
|
| paer | PA4237 [gene=rplQ] [prot=50S ribosomal protein L17] [comment=PA4237] | 107 | 7.2e-25
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L17 | 1 | Ribosomal protein L17 | 20-116 | 130.4 | 3.1e-38
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_164304041.1 | 50S ribosomal protein L17 [Streptomyces sp. SID14478] >gb
| 757 | 2.6e-101 |
| WP_111663859.1 | MULTISPECIES: 50S ribosomal protein L17 [unclassified Strept...
| 743 | 3.4e-99 |
| WP_189190325.1 | 50S ribosomal protein L17 [Streptomyces albiflavescens] >dbj...
| 743 | 4.4e-99 |
| WP_055523602.1 | 50S ribosomal protein L17 [Streptomyces graminilatus]
| 726 | 2.1e-96 |
| WP_019072274.1 | 50S ribosomal protein L17 [Streptomyces hokutonensis]
| 716 | 5.0e-95 |
| WP_093627308.1 | 50S ribosomal protein L17 [Streptomyces sp. 3213.3] >emb
| 710 | 4.1e-94 |
| WP_064729364.1 | MULTISPECIES: 50S ribosomal protein L17 [Streptomyces] >gb
| 710 | 4.3e-94 |
| WP_030400233.1 | MULTISPECIES: 50S ribosomal protein L17 [Streptomyces] >gb
| 710 | 4.3e-94 |
| WP_189776129.1 | 50S ribosomal protein L17 [Streptomyces tauricus] >dbj
| 710 | 5.4e-94 |
| WP_216719813.1 | 50S ribosomal protein L17 [Streptomyces sp. A108] >lcl
| 707 | 1.2e-93 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1164 | Seems to have no N-terminal signal seq.
|