| ID | SAVERM_4955
| Type | CDS
|
| From | 6003707
| nt length | 858
|
| To | 6004564
| aa length | 285
|
| Gene | truA
| pI | 7.31
|
| Definition | putative pseudouridine synthase
| M.W (Da) | 31388
|
| Note | PF01416: tRNA pseudouridine synthase
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4731 putative pseudouridylate synthase | 522 | 0.0e+00
|
| sgr | SGR_2805 putative pseudouridine synthase | 420 | 2.0e-150
|
| sam | SAM23877_4526 tRNA pseudouridine synthase A | 516 | 0.0e+00
|
| scab | SCAB36651 putative pseudouridine synthase | 515 | 0.0e+00
|
| sace | SACE_6801 tRNA pseudouridine synthase A | 247 | 5.0e-82
|
| nfar | nfa8390 truA tRNA pseudouridine synthase | 229 | 2.1e-61
|
| mtub | gi|15610591 tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Rv] | 209 | 1.7e-55
|
| cglu | gi|19551801 COG0101:Pseudouridylate synthase (tRNA psi55) [Corynebacterium glutamicum] | 207 | 3.5e-55
|
| bsub | BG11992 truA, ybaH; pseudouridylate synthase I [EC:4.2.1.70] | 135 | 3.6e-33
|
| ecoli | gi|16130253 tRNA pseudouridine synthase A [Escherichia coli K12] | 130 | 1.0e-31
|
| paer | PA3114 [gene=truA] [prot=tRNA-pseudouridine synthase I] [comment=PA3114] | 137 | 1.1e-33
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| PseudoU_synth_1 | 2 | tRNA pseudouridine synthase | 17-118, 159-261 | 110.6 | 4.6e-32
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497503.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces sp. SI...
| 1488 | 0.0e+00 |
| WP_168510330.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces mirabi...
| 1419 | 0.0e+00 |
| WP_075028512.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces mirabi...
| 1408 | 0.0e+00 |
| WP_181650333.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces sp. WA...
| 1404 | 0.0e+00 |
| WP_142265745.1 | MULTISPECIES: tRNA pseudouridine(38-40) synthase TruA [uncla...
| 1402 | 0.0e+00 |
| WP_168494649.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces sp. RL...
| 1400 | 0.0e+00 |
| WP_099921123.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces sp. Gb...
| 1399 | 0.0e+00 |
| WP_189190324.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces albifl...
| 1397 | 0.0e+00 |
| WP_210591622.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces sp. GE...
| 1395 | 0.0e+00 |
| WP_057602886.1 | tRNA pseudouridine(38-40) synthase TruA [Streptomyces sp. Ro...
| 1395 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4598 | Seems to have no N-terminal signal seq.
|