| ID | SAVERM_4957
| Type | CDS
|
| From | 6005829
| nt length | 444
|
| To | 6006272
| aa length | 147
|
| Gene | rplM
| pI | 10.43
|
| Definition | putative ribosomal protein L13
| M.W (Da) | 16320
|
| Note | PF00572: Ribosomal protein L13
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4734 50S ribosomal protein L13 | 283 | 9.0e-101
|
| sgr | SGR_2802 putative 50S ribosomal protein L13 | 289 | 5.0e-103
|
| sam | SAM23877_4529 50S ribosomal subunit protein L13 | 282 | 6.0e-100
|
| scab | SCAB36631 putative ribosomal protein L13 | 291 | 4.0e-104
|
| sace | SACE_6781 50S ribosomal protein L13 | 207 | 7.0e-71
|
| nfar | nfa8660 rplM ribosomal protein L13 | 218 | 2.2e-58
|
| mtub | gi|15610579 50S ribosomal protein L13 [Mycobacterium tuberculosis H37Rv] | 209 | 4.7e-56
|
| cglu | gi|19551815 COG0102:Ribosomal protein L13 [Corynebacterium glutamicum] | 181 | 9.9e-48
|
| bsub | BG11970 rplM; 50S ribosomal protein L13 | 151 | 1.4e-38
|
| ecoli | gi|16131121 50S ribosomal protein L13 [Escherichia coli K12] | 170 | 3.2e-44
|
| paer | PA4433 [gene=rplM] [prot=50S ribosomal protein L13] [comment=PA4433] | 178 | 1.6e-46
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L13 | 1 | Ribosomal protein L13 | 14-137 | 188.2 | 5.2e-56
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_055614906.1 | MULTISPECIES: 50S ribosomal protein L13 [Streptomyces] >gb
| 771 | 4.1e-104 |
| WP_055523593.1 | 50S ribosomal protein L13 [Streptomyces graminilatus]
| 770 | 6.7e-104 |
| WP_235475489.1 | 50S ribosomal protein L13 [Streptomyces sp. GQFP] >lcl
| 768 | 1.2e-103 |
| WP_127832068.1 | 50S ribosomal protein L13 [Streptomyces sp. San01] >gb
| 767 | 1.8e-103 |
| WP_225891550.1 | 50S ribosomal protein L13 [Streptomyces dioscori] >dbj
| 767 | 1.9e-103 |
| WP_006376008.1 | MULTISPECIES: 50S ribosomal protein L13 [Streptomyces] >gb
| 767 | 2.0e-103 |
| WP_189190313.1 | 50S ribosomal protein L13 [Streptomyces albiflavescens] >dbj...
| 766 | 2.4e-103 |
| WP_100594865.1 | MULTISPECIES: 50S ribosomal protein L13 [unclassified Strept...
| 765 | 3.4e-103 |
| WP_055515165.1 | MULTISPECIES: 50S ribosomal protein L13 [Streptomyces aurant...
| 765 | 4.2e-103 |
| WP_168529673.1 | MULTISPECIES: 50S ribosomal protein L13 [Streptomyces] >gb
| 760 | 2.3e-102 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1911 | Seems to have no N-terminal signal seq.
|