| ID | SAVERM_5003
| Type | CDS
|
| From | 6053578
| nt length | 1707
|
| To | 6055284
| aa length | 568
|
| Gene | glpD2
| pI | 6.67
|
| Definition | putative glycerol-3-phosphate dehydrogenase
| M.W (Da) | 61983
|
| Note | PF01266: FAD dependent oxidoreductase
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4774 putative glycerol phosphate dehydrogenase | 1033 | 0.0e+00
|
| sgr | SGR_2753 putative glycerol-3-phosphate dehydrogenase | 1001 | 0.0e+00
|
| sam | SAM23877_4587 Glycerol-3-phosphate dehydrogenase 2 | 1033 | 0.0e+00
|
| scab | SCAB36181 putative glycerol-3-phosphate dehydrogenase | 1042 | 0.0e+00
|
| sace | SACE_6515 glycerol-3-phosphate dehydrogenase | 649 | 0.0e+00
|
| nfar | nfa9720 glpD glycerol-3-phosphate dehydrogenase | 677 | 0.0e+00
|
| mtub | gi|15610438 PROBABLE GLYCEROL-3-PHOSPHATE DEHYDROGENASE GLPD2 [Mycobacterium tuberculosis H37Rv] | 649 | 0.0e+00
|
| cglu | gi|19552858 COG0578:Glycerol-3-phosphate dehydrogenase [Corynebacterium glutamicum] | 254 | 5.7e-69
|
| bsub | BG10188 glpD; glycerol-3-phosphate dehydrogenase [EC:1.1.99.5] | 248 | 6.7e-67
|
| ecoli | gi|16131300 sn-glycerol-3-phosphate dehydrogenase (aerobic) [Escherichia coli K12] | 229 | 3.7e-61
|
| paer | PA3025 [gene=PA3025] [prot=probable FAD-dependent glycerol-3-phosphate dehydrogenase] [comment=PA3025] | 248 | 1.0e-66
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DAO | 1 | FAD dependent oxidoreductase | 24-377 | 178.0 | 3.6e-52
|
| DAO_C | 1 | C-terminal domain of alpha-glycerophosphate oxidase | 404-528 | 121.9 | 1.3e-35
|
| FAD_binding_3 | 1 | FAD binding domain | 22-293 | 39.8 | 3e-10
|
| FAD_binding_2 | 1 | FAD binding domain | 172-245 | 34.2 | 1.4e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
|
| 2547 | 0.0e+00 |
| WP_079107322.1 | MULTISPECIES: glycerol-3-phosphate dehydrogenase/oxidase [un...
| 2544 | 0.0e+00 |
| WP_150171164.1 | glycerol-3-phosphate dehydrogenase/oxidase [Streptomyces ven...
| 2536 | 0.0e+00 |
| WP_098244280.1 | glycerol-3-phosphate dehydrogenase/oxidase [Streptomyces for...
| 2536 | 0.0e+00 |
| WP_198503441.1 | glycerol-3-phosphate dehydrogenase/oxidase [Streptomyces alf...
| 2535 | 0.0e+00 |
| WP_150216703.1 | glycerol-3-phosphate dehydrogenase/oxidase [Streptomyces ven...
| 2535 | 0.0e+00 |
| WP_150185774.1 | glycerol-3-phosphate dehydrogenase/oxidase [Streptomyces ven...
| 2534 | 0.0e+00 |
| WP_135333562.1 | glycerol-3-phosphate dehydrogenase/oxidase [Streptomyces sp....
| 2531 | 0.0e+00 |
| WP_189190272.1 | glycerol-3-phosphate dehydrogenase/oxidase [Streptomyces alb...
| 2530 | 0.0e+00 |
| WP_190033200.1 | glycerol-3-phosphate dehydrogenase/oxidase [Streptomyces fru...
| 2530 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1617 | Seems to have no N-terminal signal seq.
|