| ID | SAVERM_5026
| Type | CDS
|
| From | 6083724
| nt length | 1158
|
| To | 6084881
| aa length | 385
|
| Gene | fadE1
| pI | 5.06
|
| Definition | putative acyl-CoA dehydrogenase
| M.W (Da) | 41375
|
| Note | PF00441: Acyl-CoA dehydrogenase, C-terminal domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of lipids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3051 acyl-CoA dehydrogenase FadE | 745 | 0.0e+00
|
| sgr | SGR_4482 putative acyl-CoA dehydrogenase | 726 | 0.0e+00
|
| sam | SAM23877_3101 putative acyl-CoA dehydrogenase fadE25 | 706 | 0.0e+00
|
| scab | SCAB54931 putative acyl-CoA dehydrogenase | 752 | 0.0e+00
|
| sace | SACE_3580 acyl-CoA dehydrogenase | 552 | 0.0e+00
|
| nfar | nfa10050 fadE12 acyl-CoA dehydrogenase | 508 | 2.6e-145
|
| mtub | gi|15610410 PROBABLE ACYL-CoA DEHYDROGENASE FADE25 [Mycobacterium tuberculosis H37Rv] | 509 | 1.2e-145
|
| bsub | BG11239 acdA, acd; acyl-CoA dehydrogenase [EC:1.3.99.-] | 367 | 6.3e-103
|
| ecoli | gi|49176135 crotonobetainyl-CoA dehydrogenase [Escherichia coli K12] | 181 | 7.2e-47
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Acyl-CoA_dh_1 | 1 | Acyl-CoA dehydrogenase, C-terminal domain | 235-384 | 175.0 | 1e-51
|
| Acyl-CoA_dh_N | 1 | Acyl-CoA dehydrogenase, N-terminal domain | 13-124 | 104.1 | 5.9e-30
|
| Acyl-CoA_dh_M | 1 | Acyl-CoA dehydrogenase, middle domain | 128-223 | 97.6 | 3.4e-28
|
| Acyl-CoA_dh_2 | 1 | Acyl-CoA dehydrogenase, C-terminal domain | 250-373 | 95.8 | 2.2e-27
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
|
| 1911 | 0.0e+00 |
| KOG35305.1 | acyl-CoA dehydrogenase [Streptomyces resistomycificus] >gb
| 1911 | 0.0e+00 |
| PKT71411.1 | acyl-CoA dehydrogenase [Streptomyces populi]
| 1909 | 0.0e+00 |
|
| 1904 | 0.0e+00 |
|
| 1904 | 0.0e+00 |
| AVH58325.1 | acyl-CoA dehydrogenase [Streptomyces dengpaensis] >gb
| 1902 | 0.0e+00 |
| AVV42276.1 | acyl-CoA dehydrogenase [Streptomyces sp. P3]
| 1897 | 0.0e+00 |
| GHB61027.1 | acyl-CoA dehydrogenase [Streptomyces viridiviolaceus]
| 1895 | 0.0e+00 |
| GGN93397.1 | acyl-CoA dehydrogenase [Streptomyces albiflavescens]
| 1894 | 0.0e+00 |
| GHD64110.1 | acyl-CoA dehydrogenase [Streptomyces mirabilis]
| 1894 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1383 | Seems to have no N-terminal signal seq.
|