| ID | SAVERM_5042
| Type | CDS
|
| From | 6104412
| nt length | 264
|
| To | 6104675
| aa length | 87
|
| Gene | whiB
| pI | 4.48
|
| Definition | putative WhiB-family transcriptional regulator, WhiB protein
| M.W (Da) | 9892
|
| Note | PF02467: Transcription factor WhiB
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3034 sporulation regulatory protein, WhiB | 175 | 5.0e-60
|
| sgr | SGR_4503 putative WhiB-family transcriptional regulator | 171 | 2.0e-58
|
| sam | SAM23877_3074 Transcriptional regulator WhiB | 175 | 4.0e-60
|
| scab | SCAB55081 putative WhiB-family transcriptional regulator, WhiB protein | 175 | 5.0e-60
|
| sace | SACE_6464 putative transcriptional regulator (WhiB family) | 115 | 5.0e-36
|
| nfar | nfa46220 transcriptional regulator | 132 | 5.9e-33
|
| mtub | gi|15610396 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB2 [Mycobacterium tuberculosis H37Rv] | 132 | 3.3e-33
|
| cglu | gi|19551971 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 124 | 8.4e-31
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Whib | 1 | Transcription factor WhiB | 19-82 | 94.1 | 5.3e-27
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_010986447.1 | MULTISPECIES: WhiB family transcriptional regulator [Strepto...
| 446 | 2.2e-56 |
| WP_003975777.1 | MULTISPECIES: WhiB family transcriptional regulator [Strepto...
| 444 | 3.4e-56 |
| WP_055628451.1 | WhiB family transcriptional regulator [Streptomyces hirsutus...
| 442 | 7.5e-56 |
| WP_003990679.1 | MULTISPECIES: WhiB family transcriptional regulator [Strepto...
| 442 | 8.3e-56 |
| WP_217143001.1 | WhiB family transcriptional regulator [Streptomyces sp. AC62...
| 442 | 8.9e-56 |
| WP_004930599.1 | MULTISPECIES: WhiB family transcriptional regulator [Strepto...
| 442 | 9.1e-56 |
| WP_055531891.1 | MULTISPECIES: WhiB family transcriptional regulator [Strepto...
| 441 | 1.0e-55 |
| WP_108951581.1 | MULTISPECIES: WhiB family transcriptional regulator [Strepto...
| 441 | 1.0e-55 |
| WP_190059010.1 | WhiB family transcriptional regulator [Streptomyces echinoru...
| 441 | 1.2e-55 |
| WP_109380992.1 | MULTISPECIES: WhiB family transcriptional regulator [unclass...
| 441 | 1.3e-55 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4718 | Seems to have no N-terminal signal seq.
|