| ID | SAVERM_5065
| Type | CDS
|
| From | 6139317
| nt length | 1833
|
| To | 6141149
| aa length | 610
|
| Gene | lpqB
| pI | 5.1
|
| Definition | putative lipoprotein
| M.W (Da) | 65012
|
| Note |
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3011 putative lipoprotein | 776 | 0.0e+00
|
| sgr | SGR_4525 putative lipoprotein | 547 | 0.0e+00
|
| sam | SAM23877_3049 Lipoprotein LpqB | 774 | 0.0e+00
|
| scab | SCAB55301 putative lipoprotein | 802 | 0.0e+00
|
| sace | SACE_6445 lipoprotein | 100 | 4.0e-23
|
| nfar | nfa46090 hypothetical protein | 99 | 6.2e-22
|
| mtub | gi|15610380 PROBABLE CONSERVED LIPOPROTEIN LPQB [Mycobacterium tuberculosis H37Rv] | 95 | 1.2e-20
|
| cglu | gi|19551983 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 92 | 5.3e-20
|
| ecoli | gi|16129760 putative outer membrane protein [Escherichia coli K12] | 33 | 5.5e-02
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Gmad1 | 1 | Lipoprotein LpqB beta-propeller domain | 346-609 | 176.6 | 7.1e-52
|
| Germane | 1 | Sporulation and spore germination | 208-312 | 34.3 | 2.9e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_237529540.1 | LpqB family beta-propeller domain-containing protein [Strept...
| 2927 | 0.0e+00 |
| WP_055495152.1 | LpqB family beta-propeller domain-containing protein [Strept...
| 2345 | 0.0e+00 |
| GHJ99306.1 | lipoprotein LpqB [Streptomyces sp. Y2F8-2]
| 2345 | 0.0e+00 |
| WP_168492184.1 | LpqB family beta-propeller domain-containing protein [Strept...
| 2303 | 0.0e+00 |
| WP_212727311.1 | LpqB family beta-propeller domain-containing protein [Strept...
| 2300 | 0.0e+00 |
| WP_217566758.1 | LpqB family beta-propeller domain-containing protein [Strept...
| 2298 | 0.0e+00 |
| WP_043448586.1 | LpqB family beta-propeller domain-containing protein [Strept...
| 2297 | 0.0e+00 |
| GHD73352.1 | lipoprotein LpqB [Streptomyces mirabilis]
| 2295 | 0.0e+00 |
| WP_143601837.1 | MULTISPECIES: LpqB family beta-propeller domain-containing p...
| 2295 | 0.0e+00 |
| WP_075029008.1 | LpqB family beta-propeller domain-containing protein [Strept...
| 2294 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | May be a lipoprotein
|