| ID | SAVERM_5067
| Type | CDS
|
| From | 6142323
| nt length | 861
|
| To | 6143183
| aa length | 286
|
| Gene |
| pI | 8.48
|
| Definition | putative sigma 54 modulation protein/ribosomal protein S30EA
| M.W (Da) | 30813
|
| Note | PF02482: Sigma 54 modulation protein / S30EA ribosomal protein
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3009 hypothetical protein | 446 | 4.0e-161
|
| sgr | SGR_4527 conserved hypothetical protein | 363 | 1.0e-128
|
| sam | SAM23877_3047 Sigma 54 modulation protein/SSU ribosomal protein S30P | 402 | 3.0e-144
|
| scab | SCAB55331 putative sigma 54 modulation protein/ribosomal protein S30EA | 431 | 3.0e-155
|
| sace | SACE_6443 S30AE family protein | 175 | 1.0e-54
|
| nfar | nfa46070 hypothetical protein | 171 | 5.2e-44
|
| mtub | gi|15610377 hypothetical protein Rv3241c [Mycobacterium tuberculosis H37Rv] | 172 | 3.0e-44
|
| cglu | gi|19551984 COG1544:Ribosome-associated protein Y (PSrp-1) [Corynebacterium glutamicum] | 152 | 1.3e-38
|
| bsub | BG10740 yvyD, yviI; general stress protein under dual control of sigmaB and sigmaH | 80 | 1.1e-16
|
| ecoli | gi|16130518 putative yhbH sigma 54 modulator [Escherichia coli K12] | 45 | 4.2e-06
|
| paer | PA4463 [gene=PA4463] [prot=conserved hypothetical protein] [comment=PA4463] | 48 | 6.8e-07
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosom_S30AE_C | 1 | Sigma 54 modulation/S30EA ribosomal protein C terminus | 210-263 | 78.1 | 2.7e-22
|
| Ribosomal_S30AE | 1 | Sigma 54 modulation protein / S30EA ribosomal protein | 59-156 | 74.6 | 7.8e-21
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_220513059.1 | ribosome-associated translation inhibitor RaiA [Streptomyces...
| 1023 | 1.7e-138 |
| WP_237553456.1 | MULTISPECIES: ribosome-associated translation inhibitor RaiA...
| 1025 | 1.8e-138 |
| WP_238440722.1 | ribosome-associated translation inhibitor RaiA [Streptomyces...
| 1025 | 1.8e-138 |
| WP_206328488.1 | ribosome-associated translation inhibitor RaiA [Streptomyces...
| 1021 | 3.1e-138 |
| WP_202424999.1 | ribosome-associated translation inhibitor RaiA [Streptomyces...
| 1019 | 6.2e-138 |
| OPG06029.1 | ribosomal subunit interface protein [Streptomyces sp. GKU 895]
| 1018 | 9.5e-138 |
|
| 1021 | 1.4e-137 |
| WP_206210487.1 | ribosome-associated translation inhibitor RaiA [Streptomyces...
| 1016 | 2.3e-137 |
| WP_233359968.1 | MULTISPECIES: ribosome-associated translation inhibitor RaiA...
| 1017 | 3.1e-137 |
| WP_223189448.1 | ribosome-associated translation inhibitor RaiA [Streptomyces...
| 1014 | 3.7e-137 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3687 | Seems to have no N-terminal signal seq.
|