| ID | SAVERM_5069
| Type | CDS
|
| From | 6145365
| nt length | 1203
|
| To | 6144163
| aa length | 400
|
| Gene |
| pI | 8.83
|
| Definition | hypothetical protein
| M.W (Da) | 44557
|
| Note | PF06224: Protein of unknown function (DUF1006)
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3007 hypothetical protein | 686 | 0.0e+00
|
| sgr | SGR_4529 conserved hypothetical protein | 631 | 0.0e+00
|
| sam | SAM23877_3045 putative cytoplasmic protein | 687 | 0.0e+00
|
| scab | SCAB55351 hypothetical protein | 688 | 0.0e+00
|
| sace | SACE_5905 protein of unknown function DUF1006 | 220 | 2.0e-68
|
| nfar | nfa38710 hypothetical protein | 206 | 2.9e-54
|
| ecoli | gi|16128883 hypothetical protein b0916 [Escherichia coli K12] | 182 | 2.6e-47
|
| paer | PA2844 [gene=PA2844] [prot=conserved hypothetical protein] [comment=PA2844] | 245 | 5.9e-66
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HTH_42 | 1 | Winged helix DNA-binding domain | 40-371 | 214.7 | 2.1e-63
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_165342511.1 | winged helix DNA-binding domain-containing protein [Streptom...
| 1778 | 0.0e+00 |
| WP_151484339.1 | winged helix DNA-binding domain-containing protein [Streptom...
| 1771 | 0.0e+00 |
| WP_033326558.1 | winged helix DNA-binding domain-containing protein [Streptom...
| 1770 | 0.0e+00 |
| GGL11040.1 | hypothetical protein GCM10010094_84850 [Streptomyces flaveus]
| 1770 | 0.0e+00 |
| WP_067315146.1 | winged helix DNA-binding domain-containing protein [Streptom...
| 1769 | 0.0e+00 |
| WP_189327065.1 | winged helix DNA-binding domain-containing protein [Streptom...
| 1768 | 0.0e+00 |
| WP_189184665.1 | winged helix DNA-binding domain-containing protein [Streptom...
| 1765 | 0.0e+00 |
| GGN52898.1 | hypothetical protein GCM10011579_010360 [Streptomyces albiflaves...
| 1765 | 0.0e+00 |
| GHH36977.1 | hypothetical protein GCM10018775_13130 [Streptomyces umbrinus]
| 1764 | 0.0e+00 |
| WP_190227681.1 | winged helix DNA-binding domain-containing protein [Streptom...
| 1762 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2385 | Seems to have no N-terminal signal seq.
|