| ID | SAVERM_5107
| Type | CDS
|
| From | 6202121
| nt length | 534
|
| To | 6202654
| aa length | 177
|
| Gene | smpB
| pI | 10.61
|
| Definition | putative small protein B
| M.W (Da) | 20046
|
| Note | SsrA-binding protein, PF01668: SmpB protein
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | protein modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2966 smpB small protein B homologue | 278 | 6.0e-98
|
| sgr | SGR_4561 putative small protein B | 252 | 9.0e-88
|
| sam | SAM23877_3001 SsrA-binding protein | 277 | 1.0e-97
|
| scab | SCAB55751 putative small protein B | 310 | 3.0e-110
|
| sace | SACE_1108 SsrA-binding protein | 200 | 3.0e-67
|
| nfar | nfa44800 smpB small protein B | 191 | 4.1e-50
|
| mtub | gi|15610237 SsrA-binding protein [Mycobacterium tuberculosis H37Rv] | 176 | 8.0e-46
|
| cglu | gi|19552031 COG0691:tmRNA-binding protein [Corynebacterium glutamicum] | 180 | 4.0e-47
|
| bsub | BG14064 smpB, yvaI; tmRNA-binding protein | 159 | 6.8e-41
|
| ecoli | gi|16130539 SsrA-binding protein [Escherichia coli K12] | 111 | 2.4e-26
|
| paer | PA4768 [gene=smpB] [prot=SmpB protein] [comment=PA4768] | 125 | 1.7e-30
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SmpB | 1 | SmpB protein | 27-167 | 205.4 | 3e-61
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
|
| 875 | 7.9e-119 |
| WP_186001021.1 | MULTISPECIES: SsrA-binding protein SmpB [Streptomyces] >gb
| 873 | 1.1e-118 |
| GHB71791.1 | SsrA-binding protein [Streptomyces umbrinus] >dbj
| 867 | 1.3e-117 |
| WP_189843534.1 | SsrA-binding protein SmpB [Streptomyces umbrinus]
| 866 | 1.5e-117 |
| WP_190039382.1 | SsrA-binding protein SmpB [Streptomyces fructofermentans] >d...
| 866 | 1.5e-117 |
| KPI17399.1 | SsrA-binding protein [Actinobacteria bacterium OK006] >emb
| 856 | 6.8e-116 |
| WP_054229635.1 | MULTISPECIES: SsrA-binding protein SmpB [Streptomyces] >lcl
| 854 | 1.0e-115 |
| WP_192582999.1 | SsrA-binding protein SmpB [Streptomyces albicerus]
| 853 | 1.4e-115 |
| WP_229702578.1 | SsrA-binding protein SmpB [Streptomyces albiflavescens] >dbj...
| 853 | 1.6e-115 |
| WP_177324109.1 | MULTISPECIES: SsrA-binding protein SmpB [Streptomyces] >gb
| 852 | 1.6e-115 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4119 | Seems to have no N-terminal signal seq.
|