| ID | SAVERM_5120
| Type | CDS
|
| From | 6218210
| nt length | 1161
|
| To | 6219370
| aa length | 386
|
| Gene |
| pI | 6.53
|
| Definition | putative transcriptional regulator
| M.W (Da) | 40971
|
| Note | PF02602: Uroporphyrinogen-III synthase HemD
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2958 putative transcriptional regulator | 629 | 0.0e+00
|
| sgr | SGR_4576 putative transcriptional regulator | 580 | 0.0e+00
|
| sam | SAM23877_2994 hypothetical protein | 654 | 0.0e+00
|
| scab | SCAB55881 putative transcriptional regulator | 656 | 0.0e+00
|
| sace | SACE_3804 uroporphyrinogen-III synthetase | 419 | 4.0e-147
|
| nfar | nfa45590 hypothetical protein | 451 | 6.5e-128
|
| mtub | gi|15607401 uroporphyrinogen-III synthetase [Mycobacterium tuberculosis H37Rv] | 377 | 9.1e-106
|
| bsub | BG13197 yjjA; similar to hypothetical proteins | 115 | 4.3e-27
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HEM4 | 1 | Uroporphyrinogen-III synthase HemD | 30-272 | 141.4 | 2.6e-41
|
| Trans_reg_C | 1 | Transcriptional regulatory protein, C terminal | 310-373 | 49.2 | 3.9e-13
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_168492095.1 | MULTISPECIES: uroporphyrinogen-III synthase [Streptomyces] >...
| 1726 | 0.0e+00 |
| WP_190173507.1 | uroporphyrinogen-III synthase [Streptomyces mirabilis] >dbj
| 1723 | 0.0e+00 |
| WP_030603981.1 | uroporphyrinogen-III synthase [Streptomyces fulvoviolaceus]
| 1720 | 0.0e+00 |
| WP_097284931.1 | MULTISPECIES: uroporphyrinogen-III synthase [unclassified St...
| 1720 | 0.0e+00 |
| WP_141205273.1 | uroporphyrinogen-III synthase [Streptomyces griseorubiginosu...
| 1720 | 0.0e+00 |
| WP_165263632.1 | uroporphyrinogen-III synthase [Streptomyces scabichelini] >g...
| 1718 | 0.0e+00 |
| QIY96226.1 | uroporphyrinogen-III synthase [Streptomyces sp. S1D4-11]
| 1718 | 0.0e+00 |
| WP_075029059.1 | uroporphyrinogen-III synthase [Streptomyces mirabilis] >emb
| 1717 | 0.0e+00 |
| WP_143608249.1 | MULTISPECIES: uroporphyrinogen-III synthase [unclassified St...
| 1714 | 0.0e+00 |
| WP_093910915.1 | uroporphyrinogen-III synthase [Streptomyces sp. cf386] >emb
| 1713 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1201 | Seems to have no N-terminal signal seq.
|