| ID | SAVERM_5140
| Type | CDS
|
| From | 6244408
| nt length | 1797
|
| To | 6246204
| aa length | 598
|
| Gene | sdrA
| pI | 5.98
|
| Definition | putative protein involving differentiation
| M.W (Da) | 66312
|
| Note | PF04851: Type III restriction enzyme, res subunit
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2936 hypothetical protein | 1123 | 0.0e+00
|
| sgr | SGR_4601 conserved hypothetical protein | 1045 | 0.0e+00
|
| sam | SAM23877_2973 hypothetical protein | 1127 | 0.0e+00
|
| scab | SCAB56301 putative protein involving differentiation | 1117 | 0.0e+00
|
| sace | SACE_1795 type III restriction enzyme, res subunit | 659 | 0.0e+00
|
| nfar | nfa37690 hypothetical protein | 637 | 0.0e+00
|
| mtub | gi|15610054 CONSERVED HYPOTHETICAL ALANINE AND ARGININE RICH PROTEIN [Mycobacterium tuberculosis H37Rv] | 628 | 0.0e+00
|
| cglu | gi|19553118 COG1061:DNA or RNA helicases of superfamily II [Corynebacterium glutamicum] | 618 | 2.7e-178
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ResIII | 1 | Type III restriction enzyme, res subunit | 28-179 | 56.3 | 3.6e-15
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189184747.1 | DEAD/DEAH box helicase [Streptomyces albiflavescens] >dbj
| 2870 | 0.0e+00 |
| WP_217455618.1 | DEAD/DEAH box helicase [Streptomyces sp. BV286] >lcl
| 2868 | 0.0e+00 |
| WP_149514126.1 | DEAD/DEAH box helicase [Streptomyces apricus] >lcl
| 2863 | 0.0e+00 |
| WP_067379826.1 | DEAD/DEAH box helicase [Streptomyces olivochromogenes] >gb
| 2862 | 0.0e+00 |
| GAX55525.1 | hypothetical protein SO3561_07084 [Streptomyces olivochromogenes...
| 2862 | 0.0e+00 |
| NSL43531.1 | DEAD/DEAH box helicase [Streptomyces sp. 8P21H-1]
| 2860 | 0.0e+00 |
| WP_143632659.1 | DEAD/DEAH box helicase [Streptomyces sp. IB201691-2A2] >lcl
| 2860 | 0.0e+00 |
| WP_028804723.1 | DEAD/DEAH box helicase [Streptomyces sp. 142MFCol3.1]
| 2859 | 0.0e+00 |
| QIY96210.1 | DEAD/DEAH box helicase [Streptomyces sp. S1D4-11]
| 2858 | 0.0e+00 |
| SFF53682.1 | Superfamily II DNA or RNA helicase [Streptomyces mirabilis]
| 2858 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3199 | Seems to have no N-terminal signal seq.
|