| ID | SAVERM_5148
| Type | CDS
|
| From | 6253517
| nt length | 513
|
| To | 6253005
| aa length | 170
|
| Gene |
| pI | 8.53
|
| Definition | putative AsnC-family transcriptional regulator
| M.W (Da) | 18482
|
| Note | PF01037: AsnC family
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2928 putative asnC-family transcriptional regulator | 284 | 2.0e-100
|
| sgr | SGR_4611 putative AsnC-family transcriptional regulator | 290 | 9.0e-103
|
| sam | SAM23877_2966 Transcription regulator AsnC | 285 | 7.0e-101
|
| scab | SCAB56361 putative AsnC-family transcriptional regulator | 287 | 2.0e-101
|
| sace | SACE_0906 AsnC-family transcriptional regulator | 152 | 2.0e-48
|
| nfar | nfa50820 transcriptional regulator | 123 | 9.6e-30
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AsnC_trans_reg | 1 | Lrp/AsnC ligand binding domain | 82-148 | 50.3 | 1.6e-13
|
| HTH_24 | 1 | Winged helix-turn-helix DNA-binding | 14-60 | 38.0 | 8.1e-10
|
| HTH_AsnC-type | 1 | AsnC-type helix-turn-helix domain | 13-54 | 38.0 | 9.9e-10
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| QFR02610.1 | Lrp/AsnC family transcriptional regulator [Streptomyces phaeoliva...
| 801 | 6.1e-108 |
|
| 798 | 1.8e-107 |
| OSZ56913.1 | AsnC family transcriptional regulator [Streptomyces pharetrae CZA...
| 798 | 1.9e-107 |
| PIM74000.1 | Lrp/AsnC family transcriptional regulator [Streptomyces sp. JV178...
| 797 | 2.4e-107 |
|
| 794 | 8.2e-107 |
|
| 786 | 1.2e-105 |
| GGY49520.1 | AsnC family transcriptional regulator [Streptomyces djakartensis...
| 787 | 1.6e-105 |
| OLZ70042.1 | AsnC family transcriptional regulator [Streptomyces sp. IMTB 2501...
| 785 | 2.0e-105 |
| OYP17344.1 | Lrp/AsnC family transcriptional regulator [Streptomyces sp. FBKL....
| 784 | 3.2e-105 |
| MYS88407.1 | winged helix-turn-helix transcriptional regulator [Streptomyces s...
| 782 | 3.9e-105 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1211 | Seems to have no N-terminal signal seq.
|