| ID | SAVERM_5159
| Type | CDS
|
| From | 6267279
| nt length | 318
|
| To | 6267596
| aa length | 105
|
| Gene | clpS
| pI | 5.58
|
| Definition | putative ATP-dependent Clp protease adaptor protein
| M.W (Da) | 11927
|
| Note | PF02617: ATP-dependent Clp protease adaptor protein ClpS
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | adaptation to atypical conditions
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2916 hypothetical protein | 211 | 1.0e-73
|
| sgr | SGR_4623 putative ATP-dependent Clp protease adaptor protein ClpS | 186 | 2.0e-63
|
| sam | SAM23877_2953 ATP-dependent Clp protease adapter protein ClpS | 210 | 3.0e-73
|
| scab | SCAB56481 putative ATP-dependent Clp protease adaptor protein | 203 | 2.0e-70
|
| sace | SACE_1201 ATP-dependent Clp protease adaptor protein ClpS | 125 | 1.0e-39
|
| nfar | nfa10860 hypothetical protein | 115 | 5.3e-28
|
| mtub | gi|15608471 ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium tuberculosis H37Rv] | 115 | 5.9e-28
|
| cglu | gi|19553715 COG2127:Uncharacterized ACR [Corynebacterium glutamicum] | 105 | 5.9e-25
|
| ecoli | gi|16128849 ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli K12] | 47 | 2.0e-07
|
| paer | PA2621 [gene=PA2621] [prot=conserved hypothetical protein] [comment=PA2621] | 45 | 7.1e-07
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ClpS | 1 | ATP-dependent Clp protease adaptor protein ClpS | 29-98 | 81.7 | 2.3e-23
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_054229692.1 | MULTISPECIES: ATP-dependent Clp protease adapter ClpS [Strep...
| 558 | 6.4e-73 |
| WP_131567558.1 | ATP-dependent Clp protease adapter ClpS [Streptomyces sp. KM...
| 557 | 7.6e-73 |
| WP_059127851.1 | MULTISPECIES: ATP-dependent Clp protease adapter ClpS [uncla...
| 555 | 1.6e-72 |
| WP_152868500.1 | ATP-dependent Clp protease adapter ClpS [Streptomyces acidic...
| 554 | 2.1e-72 |
| WP_128378627.1 | ATP-dependent Clp protease adapter ClpS [Streptomyces cavern...
| 553 | 3.5e-72 |
| WP_151476554.1 | ATP-dependent Clp protease adapter ClpS [Streptomyces albice...
| 553 | 3.6e-72 |
| WP_148008615.1 | MULTISPECIES: ATP-dependent Clp protease adapter ClpS [Strep...
| 553 | 3.7e-72 |
| WP_030780237.1 | MULTISPECIES: ATP-dependent Clp protease adapter ClpS [Strep...
| 553 | 3.9e-72 |
| WP_085207594.1 | ATP-dependent Clp protease adapter ClpS [Streptomyces sp. Am...
| 552 | 5.2e-72 |
| WP_152774861.1 | ATP-dependent Clp protease adapter ClpS [Streptomyces spongi...
| 552 | 5.5e-72 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2814 | Seems to have no N-terminal signal seq.
|