| ID | SAVERM_5177
| Type | CDS
|
| From | 6283437
| nt length | 339
|
| To | 6283775
| aa length | 112
|
| Gene |
| pI | 11.23
|
| Definition | putative membrane protein
| M.W (Da) | 12073
|
| Note |
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2900 putative membrane protein | 130 | 2.0e-41
|
| sgr | SGR_4645 putative membrane protein | 94 | 1.0e-27
|
| sam | SAM23877_2935 putative membrane protein | 137 | 5.0e-44
|
| scab | SCAB56771 putative membrane protein | 143 | 2.0e-46
|
| nfar | nfa12650 hypothetical protein | 39 | 6.1e-05
|
| mtub | gi|15609657 POSSIBLE CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] | 38 | 1.4e-04
|
| cglu | gi|19553687 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 36 | 3.9e-04
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DUF3618 | 1 | Protein of unknown function (DUF3618) | 10-54 | 59.5 | 2.5e-16
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497510.1 | DUF3618 domain-containing protein [Streptomyces sp. SID5469]
| 461 | 9.1e-58 |
| WP_234518536.1 | DUF3618 domain-containing protein [Streptomyces glomeratus] ...
| 433 | 1.1e-53 |
| WP_059127734.1 | MULTISPECIES: DUF3618 domain-containing protein [unclassifie...
| 430 | 3.8e-53 |
| WP_119102163.1 | DUF3618 domain-containing protein [Streptomyces sporangiifor...
| 424 | 2.3e-52 |
| WP_138046281.1 | DUF3618 domain-containing protein [Streptomyces montanus] >l...
| 424 | 3.2e-52 |
| WP_028804764.1 | DUF3618 domain-containing protein [Streptomyces sp. 142MFCol...
| 419 | 1.5e-51 |
| WP_190039257.1 | DUF3618 domain-containing protein [Streptomyces fructofermen...
| 417 | 3.3e-51 |
|
| 417 | 3.5e-51 |
| WP_168501060.1 | MULTISPECIES: DUF3618 domain-containing protein [Streptomyce...
| 411 | 2.9e-50 |
| WP_055495261.1 | DUF3618 domain-containing protein [Streptomyces sp. TP-A0356...
| 411 | 3.1e-50 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.6137 | Seems to have no N-terminal signal seq.
|