| ID | SAVERM_5260
| Type | CDS
|
| From | 6373497
| nt length | 603
|
| To | 6372895
| aa length | 200
|
| Gene | orn
| pI | 4.64
|
| Definition | putative 3’->5’ exoribonuclease
| M.W (Da) | 21994
|
| Note | PF00929: Exonuclease
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2793 ornA oligoribonuclease | 375 | 1.0e-135
|
| sgr | SGR_4741 oligoribonuclease | 370 | 2.0e-133
|
| sam | SAM23877_2830 Oligoribonuclease | 380 | 2.0e-137
|
| scab | SCAB57821 putative 3'->5' exoribonuclease | 381 | 8.0e-138
|
| sace | SACE_1292 oligoribonuclease (3'->5' exoribonuclease) | 233 | 4.0e-79
|
| nfar | nfa12870 oligoribonuclease | 239 | 1.2e-64
|
| mtub | gi|15609648 oligoribonuclease [Mycobacterium tuberculosis H37Rv] | 248 | 2.0e-67
|
| cglu | gi|19553671 COG1949:Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium glutamicum] | 205 | 1.4e-54
|
| ecoli | gi|49176466 oligoribonuclease [Escherichia coli K12] | 157 | 6.1e-40
|
| paer | PA4951 [gene=orn] [prot=oligoribonuclease] [comment=PA4951] | 149 | 1.7e-37
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RNase_T | 1 | Exonuclease | 6-168 | 89.1 | 4.2e-25
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have an uncleavable N-term signal seq
|