| ID | SAVERM_5299
| Type | CDS
|
| From | 6419461
| nt length | 3774
|
| To | 6423234
| aa length | 1257
|
| Gene |
| pI | 5.69
|
| Definition | putative ABC transporter ATP-binding protein
| M.W (Da) | 135885
|
| Note | PF00005: ABC transporter
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2763 ABC transporter protein ATP-binding component. | 2061 | 0.0e+00
|
| sgr | SGR_4791 putative ABC transporter ATPase and permease component | 2003 | 0.0e+00
|
| sam | SAM23877_2794 ABC transporter ATP-binding protein | 2043 | 0.0e+00
|
| scab | SCAB58231 putative ABC transporter ATP-binding protein | 2019 | 0.0e+00
|
| sace | SACE_6384 ABC transporter protein, ATP-binding component | 1162 | 0.0e+00
|
| nfar | nfa46940 ABC transporter ATP-binding protein | 1036 | 0.0e+00
|
| mtub | gi|15607335 PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER [Mycobacterium tuberculosis H37Rv] | 1183 | 0.0e+00
|
| cglu | gi|19552356 COG1132:ABC-type multidrug/protein/lipid transport system, ATPase component [Corynebacterium glutamicum] | 894 | 0.0e+00
|
| bsub | BG13241 yknU; multidrug resistance protein | 360 | 2.2e-100
|
| ecoli | gi|16128433 ATP-binding component of a transport system [Escherichia coli K12] | 290 | 4.1e-79
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ABC_membrane | 2 | ABC transporter transmembrane region | 42-309, 692-962 | 254.3 | 1.5e-75
|
| ABC_tran | 2 | ABC transporter | 370-519, 1024-1173 | 220.5 | 8.6e-66
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_143655047.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 5115 | 0.0e+00 |
| WP_107437883.1 | ABC transporter ATP-binding protein/permease [Streptomyces m...
| 5104 | 0.0e+00 |
| WP_097225808.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 5102 | 0.0e+00 |
| WP_095854525.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 5102 | 0.0e+00 |
| WP_229702624.1 | ABC transporter ATP-binding protein/permease [Streptomyces a...
| 5101 | 0.0e+00 |
| WP_211178986.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 5093 | 0.0e+00 |
| WP_097284824.1 | MULTISPECIES: ABC transporter ATP-binding protein/permease [...
| 5088 | 0.0e+00 |
| WP_143613431.1 | MULTISPECIES: ABC transporter ATP-binding protein/permease [...
| 5088 | 0.0e+00 |
| WP_143608177.1 | MULTISPECIES: ABC transporter ATP-binding protein/permease [...
| 5086 | 0.0e+00 |
| WP_143626842.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 5084 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5437 | Seems to have no N-terminal signal seq.
|