| ID | SAVERM_5319
| Type | CDS
|
| From | 6448022
| nt length | 1569
|
| To | 6446454
| aa length | 522
|
| Gene | rbsA2
| pI | 5.22
|
| Definition | putative D-ribose ABC transporter ATP-binding protein
| M.W (Da) | 55640
|
| Note | simple sugar ABC transporter ATP-binding protein, PF00005: ABC transporter
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2746 ABC transporter protein ATP binding component. | 874 | 0.0e+00
|
| sgr | SGR_1096 putative D-ribose ABC transporter ATP-binding protein | 844 | 0.0e+00
|
| sam | SAM23877_2771 fused D-ribose transporter subunit of ABC superfamily: ATP-binding components | 872 | 0.0e+00
|
| sace | SACE_5659 ABC transporter protein, ATP binding component | 582 | 0.0e+00
|
| cglu | gi|19552473 COG1129:ABC-type sugar (aldose) transport system, ATPase component [Corynebacterium glutamicum] | 568 | 2.1e-163
|
| bsub | BG10879 rbsA; D-ribose transport system ATP-binding protein | 449 | 1.8e-127
|
| paer | PA1947 [gene=rbsA] [prot=ribose transport protein RbsA] [comment=PA1947] | 408 | 7.2e-115
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; sace, Saccharopolyspora erythraea NRRL2338; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ABC_tran | 2 | ABC transporter | 23-172, 271-424 | 164.6 | 1.6e-48
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498404.1 | sugar ABC transporter ATP-binding protein [Streptomyces sp. ...
| 2508 | 0.0e+00 |
| WP_109501163.1 | sugar ABC transporter ATP-binding protein [Streptomyces sp. ...
| 2251 | 0.0e+00 |
| WP_067433047.1 | sugar ABC transporter ATP-binding protein [Streptomyces linc...
| 2248 | 0.0e+00 |
| WP_189184934.1 | sugar ABC transporter ATP-binding protein [Streptomyces albi...
| 2238 | 0.0e+00 |
| WP_062720763.1 | sugar ABC transporter ATP-binding protein [Streptomyces caer...
| 2237 | 0.0e+00 |
| WP_067280807.1 | sugar ABC transporter ATP-binding protein [Streptomyces jedd...
| 2236 | 0.0e+00 |
| WP_059191920.1 | sugar ABC transporter ATP-binding protein [Streptomyces anti...
| 2233 | 0.0e+00 |
| WP_126272166.1 | sugar ABC transporter ATP-binding protein [Streptomyces aqui...
| 2232 | 0.0e+00 |
|
| 2232 | 0.0e+00 |
| WP_200417503.1 | sugar ABC transporter ATP-binding protein [Streptomyces sp. ...
| 2232 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1840 | Seems to have no N-terminal signal seq.
|