| ID | SAVERM_5329
| Type | CDS
|
| From | 6456160
| nt length | 2277
|
| To | 6458436
| aa length | 758
|
| Gene | recD
| pI | 6.53
|
| Definition | putative exodeoxyribonuclease V
| M.W (Da) | 82105
|
| Note | PF05127: Putative ATPase (DUF699)
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2737 putative deoxyribonuclease. | 1376 | 0.0e+00
|
| sgr | SGR_4825 putative exodeoxyribonuclease V | 1323 | 0.0e+00
|
| sam | SAM23877_2766 Deoxyribonuclease | 1391 | 0.0e+00
|
| scab | SCAB58781 putative exodeoxyribonuclease V | 1414 | 0.0e+00
|
| sace | SACE_3353 helicase RecD/TraA | 1106 | 0.0e+00
|
| nfar | nfa25470 recD RecD protein | 146 | 7.4e-36
|
| mtub | gi|15607769 PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE) [Mycobacterium tuberculosis H37Rv] | 158 | 1.4e-39
|
| bsub | BG13789 yrrC; similar to conjugation transfer protein [EC:3.1.11.5] | 422 | 2.7e-119
|
| ecoli | gi|16130723 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Escherichia coli K12] | 154 | 1.6e-38
|
| paer | PA4283 [gene=recD] [prot=exodeoxyribonuclease V alpha chain] [comment=PA4283] | 106 | 6.8e-24
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AAA_30 | 1 | AAA domain | 355-533 | 153.5 | 4.9e-45
|
| HHH_4 | 1 | Helix-hairpin-helix containing domain | 158-248 | 127.7 | 1.2e-37
|
| AAA_19 | 1 | AAA domain | 359-488 | 116.8 | 8.8e-34
|
| UvrD_C_2 | 1 | UvrD-like helicase C-terminal domain | 677-725 | 72.3 | 2e-20
|
| HHH_5 | 1 | Helix-hairpin-helix domain | 108-157 | 33.0 | 6.4e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_220293992.1 | ATP-dependent RecD-like DNA helicase [Streptomyces sp. MBT84...
| 3518 | 0.0e+00 |
| WP_059131319.1 | ATP-dependent RecD-like DNA helicase [Streptomyces sp. NRRL ...
| 3511 | 0.0e+00 |
| NUQ99356.1 | ATP-dependent RecD-like DNA helicase [Streptomyces sp.]
| 3481 | 0.0e+00 |
| WP_165265850.1 | ATP-dependent RecD-like DNA helicase [Streptomyces scabichel...
| 3479 | 0.0e+00 |
| WP_210591353.1 | ATP-dependent RecD-like DNA helicase [Streptomyces sp. GESEQ...
| 3478 | 0.0e+00 |
| WP_138047609.1 | ATP-dependent RecD-like DNA helicase [Streptomyces montanus]...
| 3476 | 0.0e+00 |
| WP_189320129.1 | ATP-dependent RecD-like DNA helicase [Streptomyces flaveus] ...
| 3472 | 0.0e+00 |
| WP_217177779.1 | ATP-dependent RecD-like DNA helicase [Streptomyces sp. AC495...
| 3469 | 0.0e+00 |
| WP_033322737.1 | ATP-dependent RecD-like DNA helicase [Streptomyces yerevanen...
| 3469 | 0.0e+00 |
| WP_165341242.1 | ATP-dependent RecD-like DNA helicase [Streptomyces ureilytic...
| 3466 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have an uncleavable N-term signal seq
|