| ID | SAVERM_5385
| Type | CDS
|
| From | 6532160
| nt length | 1101
|
| To | 6531060
| aa length | 366
|
| Gene |
| pI | 5.49
|
| Definition | putative membrane protein
| M.W (Da) | 38532
|
| Note | PF00924: Mechanosensitive ion channel
| AseI frg. | B
|
| SignalP v.4.0 | Signal peptide | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2656 putative membrane protein | 509 | 0.0e+00
|
| sgr | SGR_4875 putative membrane protein | 477 | 2.0e-170
|
| sam | SAM23877_2706 putative membrane protein | 546 | 0.0e+00
|
| scab | SCAB59521 putative membrane protein | 566 | 0.0e+00
|
| sace | SACE_1332 MscS mechanosensitive ion channel | 243 | 3.0e-79
|
| nfar | nfa44870 transporter | 144 | 1.6e-35
|
| mtub | gi|15610241 POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] | 151 | 7.6e-38
|
| cglu | gi|19552490 COG0668:Small-conductance mechanosensitive channel [Corynebacterium glutamicum] | 84 | 8.0e-18
|
| bsub | BG13304 ykuT; similar to hypothetical proteins | 117 | 8.1e-28
|
| ecoli | gi|49176049 putative transport protein [Escherichia coli K12] | 99 | 2.6e-22
|
| paer | PA5121 [gene=PA5121] [prot=hypothetical protein] [comment=PA5121] | 110 | 2.0e-25
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| MS_channel | 1 | Mechanosensitive ion channel | 118-317 | 118.8 | 2e-34
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_237529564.1 | mechanosensitive ion channel family protein [Streptomyces sp...
| 1560 | 0.0e+00 |
|
| 1378 | 0.0e+00 |
| SOD86540.1 | small conductance mechanosensitive channel [Streptomyces sp. Ag1...
| 1377 | 0.0e+00 |
| WP_094214598.1 | MULTISPECIES: mechanosensitive ion channel family protein [S...
| 1372 | 0.0e+00 |
| WP_228046886.1 | mechanosensitive ion channel family protein [Streptomyces ju...
| 1372 | 0.0e+00 |
| WP_059191831.1 | mechanosensitive ion channel family protein [Streptomyces an...
| 1362 | 0.0e+00 |
| WP_126271950.1 | mechanosensitive ion channel [Streptomyces aquilus] >gb
| 1362 | 0.0e+00 |
| NUO44003.1 | mechanosensitive ion channel family protein [Streptomyces sp.]
| 1359 | 0.0e+00 |
| WP_067003425.1 | mechanosensitive ion channel [Streptomyces cellostaticus] >g...
| 1359 | 0.0e+00 |
| WP_037675526.1 | mechanosensitive ion channel family protein [Streptomyces gr...
| 1356 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5310 | Seems to have a cleavable N-term signal seq.
|