| ID | SAVERM_5425
| Type | CDS
|
| From | 6579576
| nt length | 1485
|
| To | 6578092
| aa length | 494
|
| Gene | gabP
| pI | 7.66
|
| Definition | putative gamma-aminobutyrate permease
| M.W (Da) | 51889
|
| Note | PF00324: Amino acid permease
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2628 putative amino acid permease | 642 | 0.0e+00
|
| sgr | SGR_4914 putative gamma-aminobutyrate permease | 699 | 0.0e+00
|
| sam | SAM23877_2678 gamma-aminobutyrate transporter | 794 | 0.0e+00
|
| scab | SCAB59841 putative gamma-aminobutyrate permease | 783 | 0.0e+00
|
| sace | SACE_3027 gamma-aminobutyrate permease | 513 | 0.0e+00
|
| mtub | gi|57116749 PROBABLE GABA PERMEASE GABP (4-AMINO BUTYRATE TRANSPORT CARRIER) (GAMA-AMINOBUTYRATE PERMEASE) [Mycobacterium tuberculosis H37Rv] | 413 | 1.5e-116
|
| bsub | BG11328 gabP, nrg-21; gamma-aminobutyrate permease | 490 | 8.7e-140
|
| ecoli | gi|16130577 gamma-aminobutyrate transport protein, RpoS-dependent (APC family) [Escherichia coli K12] | 460 | 8.3e-131
|
| paer | PA0129 [gene=gabP] [prot=gamma-aminobutyrate permease] [comment=PA0129] | 471 | 5.0e-134
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AA_permease | 1 | Amino acid permease | 32-439 | 392.1 | 2.9e-117
|
| AA_permease_2 | 1 | Amino acid permease | 33-456 | 126.6 | 1e-36
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.7496 | Seems to have no N-terminal signal seq.
|