| ID | SAVERM_5449
| Type | CDS
|
| From | 6609255
| nt length | 1287
|
| To | 6610541
| aa length | 428
|
| Gene | clpX2
| pI | 4.78
|
| Definition | putative ATP-dependent Clp Protease ATP binding subunit
| M.W (Da) | 46868
|
| Note | PF07724: ATPase family associated with various cellular activities (AAA)
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | adaptation to atypical conditions
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2617 clpX ATP dependent Clp Protease ATP binding subunit | 837 | 0.0e+00
|
| sgr | SGR_4925 putative ATP-dependent Clp Protease ATP binding subunit | 810 | 0.0e+00
|
| sam | SAM23877_2666 ATP-dependent Clp protease ATP-binding subunit | 842 | 0.0e+00
|
| scab | SCAB59961 hypothetical protein | 857 | 0.0e+00
|
| sace | SACE_1362 putative Clp protease ATP-binding subunit | 677 | 0.0e+00
|
| nfar | nfa13350 clpX Clp protease ATP-binding subunit | 678 | 0.0e+00
|
| mtub | gi|15609594 ATP-dependent protease ATP-binding subunit [Mycobacterium tuberculosis H37Rv] | 664 | 0.0e+00
|
| cglu | gi|19553586 COG1219:ATP-dependent protease Clp, ATPase subunit [Corynebacterium glutamicum] | 567 | 4.9e-163
|
| bsub | BG11387 clpX; ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) | 545 | 2.5e-156
|
| ecoli | gi|16128423 ATP-dependent protease ATP-binding subunit [Escherichia coli K12] | 520 | 9.8e-149
|
| paer | PA1802 [gene=clpX] [prot=ATP-dependent Clp protease ATP-binding subunit ClpX] [comment=PA1802] | 530 | 7.6e-152
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AAA_2 | 1 | AAA domain (Cdc48 subfamily) | 115-312 | 173.9 | 2.9e-51
|
| zf-C4_ClpX | 1 | ClpX C4-type zinc finger | 12-48 | 73.3 | 9.7e-21
|
| AAA | 1 | ATPase family associated with various cellular activities (AAA) | 118-245 | 61.4 | 1.1e-16
|
| ClpB_D2-small | 1 | C-terminal, D2-small domain, of ClpB protein | 318-395 | 57.7 | 8.7e-16
|
| AAA_5 | 1 | AAA domain (dynein-related subfamily) | 117-194 | 31.2 | 1.7e-07
|
| RuvB_N | 1 | Holliday junction DNA helicase ruvB N-terminus | 62-197 | 24.4 | 1.4e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_184894103.1 | MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit...
| 2203 | 0.0e+00 |
| WP_126392213.1 | ATP-dependent Clp protease ATP-binding subunit ClpX [Strepto...
| 2200 | 0.0e+00 |
| WP_093908449.1 | MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit...
| 2197 | 0.0e+00 |
| WP_149830569.1 | ATP-dependent Clp protease ATP-binding subunit ClpX [Strepto...
| 2197 | 0.0e+00 |
| WP_095753096.1 | MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit...
| 2195 | 0.0e+00 |
| WP_055519445.1 | MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit...
| 2195 | 0.0e+00 |
| WP_067241120.1 | ATP-dependent Clp protease ATP-binding subunit ClpX [Strepto...
| 2195 | 0.0e+00 |
| WP_004001291.1 | MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit...
| 2193 | 0.0e+00 |
| WP_189781433.1 | ATP-dependent Clp protease ATP-binding subunit ClpX [Strepto...
| 2193 | 0.0e+00 |
| WP_137306857.1 | ATP-dependent Clp protease ATP-binding subunit ClpX [Strepto...
| 2192 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3078 | Seems to have no N-terminal signal seq.
|