| ID | SAVERM_5454
| Type | CDS
|
| From | 6616789
| nt length | 414
|
| To | 6617202
| aa length | 137
|
| Gene | ndkA
| pI | 5.29
|
| Definition | putative nucleoside diphosphate kinase
| M.W (Da) | 15048
|
| Note | PF00334: Nucleoside diphosphate kinase
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of nucleotides & nucleic acids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2612 ndk nucleoside diphosphate kinase | 265 | 5.0e-94
|
| sgr | SGR_4930 putative nucleoside diphosphate kinase | 242 | 8.0e-85
|
| sam | SAM23877_2659 Nucleoside diphosphate kinase | 261 | 3.0e-92
|
| scab | SCAB60011 putative nucleoside diphosphate kinase | 261 | 4.0e-92
|
| sace | SACE_1401 nucleoside diphosphate kinase | 172 | 3.0e-57
|
| nfar | nfa13510 ndk nucleoside diphosphate kinase | 152 | 1.0e-38
|
| mtub | gi|15609582 nucleoside diphosphate kinase [Mycobacterium tuberculosis H37Rv] | 162 | 5.8e-42
|
| cglu | gi|19553569 COG0105:Nucleoside diphosphate kinase [Corynebacterium glutamicum] | 156 | 3.9e-40
|
| bsub | BG10282 ndk; nucleoside diphosphate kinase [EC:2.7.4.6] | 145 | 8.6e-37
|
| ecoli | gi|16130443 nucleoside diphosphate kinase [Escherichia coli K12] | 109 | 7.6e-26
|
| paer | PA3807 [gene=ndk] [prot=nucleoside diphosphate kinase] [comment=PA3807] | 120 | 4.4e-29
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| NDK | 1 | Nucleoside diphosphate kinase | 3-134 | 177.0 | 1.6e-52
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| QIY95912.1 | nucleoside-diphosphate kinase [Streptomyces sp. S1D4-11]
| 628 | 1.2e-82 |
| WP_054231901.1 | MULTISPECIES: nucleoside-diphosphate kinase [Streptomyces] >...
| 628 | 1.3e-82 |
| WP_060901952.1 | nucleoside-diphosphate kinase [Streptomyces sp. WAC00263] >l...
| 625 | 4.2e-82 |
| WP_079662271.1 | nucleoside-diphosphate kinase [Streptomyces sp. 3214.6] >emb...
| 624 | 5.0e-82 |
|
| 621 | 1.4e-81 |
| WP_189185075.1 | nucleoside-diphosphate kinase [Streptomyces albiflavescens] ...
| 621 | 1.6e-81 |
| WP_069772797.1 | nucleoside-diphosphate kinase [Streptomyces sp. LUP30]
| 621 | 1.8e-81 |
| WP_057615965.1 | MULTISPECIES: nucleoside-diphosphate kinase [Streptomyces] >...
| 620 | 2.0e-81 |
| KDN72650.1 | nucleoside diphosphate kinase [Streptomyces olindensis]
| 620 | 2.0e-81 |
| WP_104780585.1 | MULTISPECIES: nucleoside-diphosphate kinase [Streptomyces] >...
| 620 | 2.0e-81 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3193 | Seems to have no N-terminal signal seq.
|