| ID | SAVERM_5460
| Type | CDS
|
| From | 6624084
| nt length | 1524
|
| To | 6625607
| aa length | 507
|
| Gene |
| pI | 10.34
|
| Definition | hypothetical protein
| M.W (Da) | 55585
|
| Note | PF05235: CHAD domain
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0544 hypothetical secreted protein | 472 | 6.0e-164
|
| sgr | SGR_4936 conserved hypothetical protein | 525 | 0.0e+00
|
| sam | SAM23877_6995 hypothetical protein | 511 | 4.0e-179
|
| scab | SCAB60071 hypothetical protein | 585 | 0.0e+00
|
| sace | SACE_1012 CHAD domain containing protein | 108 | 4.0e-27
|
| nfar | nfa16470 hypothetical protein | 172 | 8.0e-44
|
| mtub | gi|15609363 hypothetical protein Rv2226 [Mycobacterium tuberculosis H37Rv] | 261 | 5.9e-71
|
| cglu | gi|19553432 COG0214:Pyridoxine biosynthesis enzyme [Corynebacterium glutamicum] | 172 | 4.3e-44
|
| bsub | BG10358 dnaB; replication initiation and membrane attachment protein | 29 | 5.6e-01
|
| ecoli | gi|16130950 hypothetical protein b3054 [Escherichia coli K12] | 35 | 8.9e-03
|
| paer | PA2872 [gene=PA2872] [prot=hypothetical protein] [comment=PA2872] | 35 | 1.6e-02
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| CHAD | 1 | CHAD domain | 228-460 | 168.6 | 1.9e-49
|
| CYTH | 1 | CYTH domain | 6-197 | 51.6 | 9.6e-14
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189185080.1 | CYTH and CHAD domain-containing protein [Streptomyces albifl...
| 1609 | 0.0e+00 |
| WP_095854695.1 | CYTH and CHAD domain-containing protein [Streptomyces sp. Ag...
| 1561 | 0.0e+00 |
| WP_097225954.1 | CYTH and CHAD domain-containing protein [Streptomyces sp. OV...
| 1560 | 0.0e+00 |
| WP_055509947.1 | MULTISPECIES: CYTH and CHAD domain-containing protein [Strep...
| 1559 | 0.0e+00 |
| WP_190227928.1 | CYTH and CHAD domain-containing protein [Streptomyces umbrin...
| 1550 | 0.0e+00 |
| WP_189837861.1 | CYTH and CHAD domain-containing protein [Streptomyces umbrin...
| 1545 | 0.0e+00 |
| WP_033328060.1 | CYTH and CHAD domain-containing protein [Streptomyces yereva...
| 1545 | 0.0e+00 |
| WP_151471389.1 | CYTH and CHAD domain-containing protein [Streptomyces tritic...
| 1545 | 0.0e+00 |
| WP_151481563.1 | CYTH and CHAD domain-containing protein [Streptomyces albice...
| 1542 | 0.0e+00 |
| WP_189319989.1 | CYTH and CHAD domain-containing protein [Streptomyces flaveu...
| 1541 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2029 | Seems to have no N-terminal signal seq.
|