| ID | SAVERM_5465
| Type | CDS
|
| From | 6631806
| nt length | 4164
|
| To | 6635969
| aa length | 1387
|
| Gene |
| pI | 4.88
|
| Definition | hypothetical protein
| M.W (Da) | 146080
|
| Note | PF00575: S1 RNA binding domain
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2599 hypothetical protein | 1067 | 0.0e+00
|
| sam | SAM23877_2648 Cytoplasmic axial filament protein CafA and Ribonuclease G | 1026 | 0.0e+00
|
| scab | SCAB60141 hypothetical protein | 1071 | 0.0e+00
|
| sace | SACE_1406 ribonuclease, Rne/Rng family | 746 | 0.0e+00
|
| nfar | nfa13520 hypothetical protein | 843 | 0.0e+00
|
| mtub | gi|15609581 POSSIBLE RIBONUCLEASE E RNE [Mycobacterium tuberculosis H37Rv] | 694 | 0.0e+00
|
| cglu | gi|19553563 COG1530:Ribonucleases G and E [Corynebacterium glutamicum] | 622 | 2.7e-179
|
| ecoli | gi|16131135 RNase G [Escherichia coli K12] | 300 | 3.4e-82
|
| paer | PA4477 [gene=cafA] [prot=cytoplasmic axial filament protein] [comment=PA4477] | 331 | 3.2e-91
|
*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RNase_E_G | 1 | Ribonuclease E/G family | 732-1001 | 359.8 | 8.1e-108
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4245 | Seems to have no N-terminal signal seq.
|