| ID | SAVERM_5467
| Type | CDS
|
| From | 6637749
| nt length | 321
|
| To | 6638069
| aa length | 106
|
| Gene | rplU
| pI | 10
|
| Definition | putative ribosomal protein L21
| M.W (Da) | 11637
|
| Note | PF00829: Ribosomal prokaryotic L21 protein
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2597 ribosomal protein L21 | 204 | 1.0e-70
|
| sgr | SGR_4953 putative 50S ribosomal protein L21 | 199 | 5.0e-69
|
| sam | SAM23877_2645 50S ribosomal protein L21 | 206 | 1.0e-71
|
| scab | SCAB60151 putative ribosomal protein L21 | 206 | 2.0e-71
|
| sace | SACE_1414 50S ribosomal protein L21 | 104 | 2.0e-31
|
| nfar | nfa13530 rplU ribosomal protein L21 | 105 | 4.2e-25
|
| mtub | gi|15609579 50S ribosomal protein L21 [Mycobacterium tuberculosis H37Rv] | 112 | 6.7e-27
|
| cglu | gi|19553562 COG0261:Ribosomal protein L21 [Corynebacterium glutamicum] | 110 | 1.5e-26
|
| bsub | BG10333 rplU; 50S ribosomal protein L21 | 74 | 1.4e-15
|
| ecoli | gi|16131076 50S ribosomal protein L21 [Escherichia coli K12] | 82 | 5.7e-18
|
| paer | PA4568 [gene=rplU] [prot=50S ribosomal protein L21] [comment=PA4568] | 81 | 1.2e-17
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L21p | 1 | Ribosomal prokaryotic L21 protein | 1-101 | 110.7 | 3.1e-32
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_020269559.1 | MULTISPECIES: 50S ribosomal protein L21 [Streptomyces] >gb
| 452 | 9.3e-57 |
| WP_033328069.1 | 50S ribosomal protein L21 [Streptomyces yerevanensis] >gb
| 450 | 1.9e-56 |
| WP_173261386.1 | 50S ribosomal protein L21 [Streptomyces sp. CWH03]
| 450 | 2.0e-56 |
| WP_128555456.1 | 50S ribosomal protein L21 [Streptomyces triticagri] >gb
| 449 | 2.5e-56 |
| WP_007449531.1 | MULTISPECIES: 50S ribosomal protein L21 [Streptomyces] >gb
| 447 | 5.5e-56 |
| WP_003990208.1 | MULTISPECIES: 50S ribosomal protein L21 [Streptomyces] >gb
| 447 | 5.8e-56 |
| WP_028802589.1 | MULTISPECIES: 50S ribosomal protein L21 [Streptomyces] >gb
| 447 | 6.3e-56 |
| WP_164583905.1 | 50S ribosomal protein L21 [Streptomyces seoulensis] >gb
| 446 | 7.0e-56 |
| WP_010476312.1 | MULTISPECIES: 50S ribosomal protein L21 [Streptomyces] >lcl
| 446 | 8.1e-56 |
| WP_099928855.1 | MULTISPECIES: 50S ribosomal protein L21 [unclassified Strept...
| 446 | 8.5e-56 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1589 | Seems to have no N-terminal signal seq.
|