| ID | SAVERM_5558
| Type | CDS
|
| From | 6723063
| nt length | 1011
|
| To | 6724073
| aa length | 336
|
| Gene | holA
| pI | 5.98
|
| Definition | putative DNA polymerase III delta subunit
| M.W (Da) | 34934
|
| Note | PF06144: DNA polymerase III, delta subunit
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2564 putative DNA-binding protein | 565 | 0.0e+00
|
| sgr | SGR_4982 putative DNA-binding protein | 511 | 0.0e+00
|
| sam | SAM23877_2610 putative DNA-binding protein | 565 | 0.0e+00
|
| scab | SCAB61441 putative DNA polymerase III delta subunit | 557 | 0.0e+00
|
| sace | SACE_1438 DNA polymerase III delta subunit | 241 | 1.0e-78
|
| nfar | nfa13940 hypothetical protein | 254 | 5.7e-69
|
| mtub | gi|15609550 hypothetical protein Rv2413c [Mycobacterium tuberculosis H37Rv] | 233 | 1.0e-62
|
| cglu | gi|19553545 COG1466:DNA polymerase III delta subunit [Corynebacterium glutamicum] | 186 | 1.8e-48
|
| paer | PA3989 [gene=holA] [prot=DNA polymerase III, delta subunit] [comment=PA3989] | 61 | 9.7e-11
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_pol3_delta | 1 | DNA polymerase III, delta subunit | 24-187 | 41.2 | 1.3e-10
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| QFZ76432.1 | DNA polymerase III subunit delta [Streptomyces fagopyri]
| 1168 | 2.1e-158 |
| AVH58798.1 | DNA polymerase III subunit delta [Streptomyces dengpaensis] >gb
| 1161 | 2.2e-157 |
| EFF90976.1 | DNA polymerase III, delta subunit [Streptomyces sp. e14]
| 1160 | 4.6e-157 |
| OXS30868.1 | DNA polymerase III subunit delta [Streptomyces sp. XY006]
| 1159 | 5.2e-157 |
| WP_194280681.1 | DNA polymerase III subunit delta [Streptomyces fagopyri]
| 1157 | 8.9e-157 |
|
| 1157 | 9.8e-157 |
| PTM88189.1 | DNA polymerase III delta subunit [Streptomyces sp. VMFN-G11Ma]
| 1156 | 1.4e-156 |
| WP_229702673.1 | DNA polymerase III subunit delta [Streptomyces albiflavescen...
| 1154 | 2.6e-156 |
| GGN55577.1 | DNA-binding protein [Streptomyces albiflavescens]
| 1153 | 3.5e-156 |
| WP_180289158.1 | MULTISPECIES: DNA polymerase III subunit delta [Streptomyces...
| 1152 | 4.0e-156 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have no N-terminal signal seq.
|