| ID | SAVERM_5560
| Type | CDS
|
| From | 6724827
| nt length | 267
|
| To | 6724561
| aa length | 88
|
| Gene | rpsT
| pI | 11.67
|
| Definition | putative ribosomal protein S20
| M.W (Da) | 9496
|
| Note | PF01649: Ribosomal protein S20
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2563 30s ribosomal protein S20. | 154 | 1.0e-51
|
| sgr | SGR_4983 putative 30S ribosomal protein S20 | 141 | 2.0e-46
|
| sam | SAM23877_2609 30S ribosomal protein S20 | 157 | 5.0e-53
|
| scab | SCAB61451 putative ribosomal protein S20 | 158 | 5.0e-53
|
| sace | SACE_1439 30S ribosomal protein S20 | 98 | 1.0e-29
|
| nfar | nfa13960 rpsT ribosomal protein S20 | 107 | 1.6e-25
|
| mtub | gi|15609549 30S ribosomal protein S20 [Mycobacterium tuberculosis H37Rv] | 115 | 7.1e-28
|
| cglu | gi|19553542 COG0268:Ribosomal protein S20 [Corynebacterium glutamicum] | 100 | 7.6e-24
|
| bsub | BG11643 rpsT, yqeO; 30S ribosomal protein S20 | 76 | 2.6e-16
|
| ecoli | gi|16128017 30S ribosomal protein S20 [Escherichia coli K12] | 58 | 7.9e-11
|
| paer | PA4563 [gene=rpsT] [prot=30S ribosomal protein S20] [comment=PA4563] | 60 | 3.0e-11
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S20p | 1 | Ribosomal protein S20 | 2-83 | 90.1 | 1e-25
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_055573616.1 | 30S ribosomal protein S20 [Streptomyces prasinopilosus] >emb...
| 299 | 5.6e-34 |
| WP_152168622.1 | 30S ribosomal protein S20 [Streptomyces phaeolivaceus] >gb
| 298 | 9.3e-34 |
| WP_059131542.1 | 30S ribosomal protein S20 [Streptomyces sp. NRRL F-5122] >gb...
| 298 | 9.3e-34 |
| WP_086750302.1 | 30S ribosomal protein S20 [Streptomyces scabiei]
| 297 | 1.1e-33 |
| WP_055609145.1 | MULTISPECIES: 30S ribosomal protein S20 [Streptomyces] >gb
| 297 | 1.1e-33 |
| WP_129309226.1 | MULTISPECIES: 30S ribosomal protein S20 [Streptomyces]
| 297 | 1.4e-33 |
| WP_119582169.1 | 30S ribosomal protein S20 [Streptomyces europaeiscabiei]
| 296 | 1.5e-33 |
| WP_037699873.1 | MULTISPECIES: 30S ribosomal protein S20 [Streptomyces] >gb
| 296 | 1.5e-33 |
| WP_086799447.1 | 30S ribosomal protein S20 [Streptomyces caniscabiei] >lcl
| 296 | 1.6e-33 |
| WP_033525839.1 | MULTISPECIES: 30S ribosomal protein S20 [Streptomyces] >lcl
| 296 | 1.7e-33 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3663 | Seems to have no N-terminal signal seq.
|