| ID | SAVERM_5566
| Type | CDS
|
| From | 6736403
| nt length | 1233
|
| To | 6737635
| aa length | 410
|
| Gene | hemN
| pI | 4.81
|
| Definition | putative oxygen-independent coproporphyrinogen III oxidase
| M.W (Da) | 44236
|
| Note | PF06969: HemN C-terminal region
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2559 putative oxygen-independent coproporphyrinogen III oxidase. | 741 | 0.0e+00
|
| sgr | SGR_4989 putative oxygen-independent coproporphyrinogen III oxidase | 742 | 0.0e+00
|
| sam | SAM23877_2604 putative oxygen-independent coproporphyrinogen-III oxidase | 719 | 0.0e+00
|
| scab | SCAB61511 putative oxygen-independent coproporphyrinogen III oxidase | 738 | 0.0e+00
|
| sace | SACE_1477 putative oxygen-independent coproporphyrinogen III oxidase | 473 | 3.0e-167
|
| nfar | nfa14210 oxygen-independent coproporphyrinogen III oxidase | 441 | 4.2e-125
|
| mtub | gi|15609525 coproporphyrinogen III oxidase [Mycobacterium tuberculosis H37Rv] | 403 | 1.3e-113
|
| cglu | gi|19553490 COG0635:Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Corynebacterium glutamicum] | 376 | 9.0e-106
|
| bsub | BG11395 hemN, yqeR; coproporphyrinogen III oxidase [EC:1.-.-.-] | 162 | 2.5e-41
|
| ecoli | gi|16130856 coproporphyrinogen III oxidase [Escherichia coli K12] | 170 | 1.4e-43
|
| paer | PA0386 [gene=PA0386] [prot=probable oxidase] [comment=PA0386] | 177 | 1.5e-45
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Radical_SAM | 1 | Radical SAM superfamily | 35-213 | 74.2 | 1.4e-20
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_153290673.1 | radical SAM family heme chaperone HemW [Streptomyces fagopyr...
| 1895 | 0.0e+00 |
|
| 1892 | 0.0e+00 |
| WP_164370780.1 | radical SAM family heme chaperone HemW [Streptomyces sp. SID...
| 1890 | 0.0e+00 |
| GGN55610.1 | coproporphyrinogen III oxidase [Streptomyces albiflavescens]
| 1889 | 0.0e+00 |
| WP_081217221.1 | radical SAM family heme chaperone HemW [Streptomyces sp. M41...
| 1888 | 0.0e+00 |
| WP_187286010.1 | radical SAM family heme chaperone HemW [Streptomyces sp. me1...
| 1887 | 0.0e+00 |
| WP_189185129.1 | radical SAM family heme chaperone HemW [Streptomyces albifla...
| 1887 | 0.0e+00 |
| WP_168528052.1 | radical SAM family heme chaperone HemW [Streptomyces sp. RPA...
| 1886 | 0.0e+00 |
| WP_103553327.1 | radical SAM family heme chaperone HemW [Streptomyces populi]...
| 1883 | 0.0e+00 |
| WP_200303267.1 | radical SAM family heme chaperone HemW [Streptomyces adelaid...
| 1880 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1603 | Seems to have no N-terminal signal seq.
|