| ID | SAVERM_5572
| Type | CDS
|
| From | 6742924
| nt length | 750
|
| To | 6743673
| aa length | 249
|
| Gene | sdrD
| pI | 6.25
|
| Definition | putative protein involving differentiation
| M.W (Da) | 26369
|
| Note | PF04452: Protein of unknown function (DUF558)
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2552 hypothetical protein | 329 | 1.0e-115
|
| sgr | SGR_4996 conserved hypothetical protein | 319 | 9.0e-112
|
| sam | SAM23877_2597 Ribosomal RNA small subunit methyltransferase E | 335 | 4.0e-118
|
| scab | SCAB61581 putative protein involving differentiation | 349 | 1.0e-123
|
| sace | SACE_1481 protein involving differentiation | 180 | 5.0e-57
|
| nfar | nfa14270 hypothetical protein | 192 | 2.3e-50
|
| mtub | gi|15609509 hypothetical protein Rv2372c [Mycobacterium tuberculosis H37Rv] | 196 | 1.2e-51
|
| cglu | gi|19553487 COG1385:Uncharacterized BCR [Corynebacterium glutamicum] | 207 | 3.8e-55
|
| bsub | BG11645 yqeU; similar to unknown proteins | 106 | 1.1e-24
|
| ecoli | gi|49176287 hypothetical protein b2946 [Escherichia coli K12] | 81 | 5.8e-17
|
| paer | PA0419 [gene=PA0419] [prot=conserved hypothetical protein] [comment=PA0419] | 87 | 1.4e-18
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Methyltrans_RNA | 1 | RNA methyltransferase | 20-242 | 217.3 | 1.5e-64
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189185135.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase [Streptomyces...
| 930 | 4.7e-125 |
| WP_075032702.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase [Streptomyces...
| 927 | 1.6e-124 |
| WP_060901965.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase [Streptomyces...
| 921 | 1.1e-123 |
| WP_097284682.1 | MULTISPECIES: 16S rRNA (uracil(1498)-N(3))-methyltransferase...
| 920 | 1.8e-123 |
| WP_095934226.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase [Streptomyces...
| 919 | 2.6e-123 |
| WP_028804623.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase [Streptomyces...
| 916 | 8.6e-123 |
| WP_095854735.1 | MULTISPECIES: 16S rRNA (uracil(1498)-N(3))-methyltransferase...
| 915 | 9.0e-123 |
| WP_190168823.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase [Streptomyces...
| 914 | 1.7e-122 |
| WP_217565664.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase [Streptomyces...
| 910 | 5.6e-122 |
| WP_067369947.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase [Streptomyces...
| 910 | 6.7e-122 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3386 | Seems to have no N-terminal signal seq.
|