| ID | SAVERM_5584
| Type | CDS
|
| From | 6757634
| nt length | 498
|
| To | 6758131
| aa length | 165
|
| Gene |
| pI | 3.99
|
| Definition | hypothetical protein
| M.W (Da) | 18173
|
| Note | PF02130: Uncharacterized protein family UPF0054
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2533 conserved hypothetical protein | 315 | 5.0e-113
|
| sgr | SGR_5003 conserved hypothetical protein | 315 | 5.0e-113
|
| sam | SAM23877_2584 Endoribonuclease YbeY | 323 | 7.0e-116
|
| scab | SCAB61701 hypothetical protein | 321 | 3.0e-115
|
| sace | SACE_1484 protein of unknown function UPF0054 | 159 | 6.0e-51
|
| nfar | nfa14330 hypothetical protein | 181 | 3.7e-47
|
| mtub | gi|15609504 hypothetical protein Rv2367c [Mycobacterium tuberculosis H37Rv] | 175 | 1.6e-45
|
| cglu | gi|19553485 COG0319:Predicted metal-dependent hydrolase [Corynebacterium glutamicum] | 153 | 3.5e-39
|
| bsub | BG11656 yqfG; similar to unknown proteins | 82 | 1.6e-17
|
| ecoli | gi|16128642 hypothetical protein b0659 [Escherichia coli K12] | 70 | 5.5e-14
|
| paer | PA3982 [gene=PA3982] [prot=conserved hypothetical protein] [comment=PA3982] | 57 | 6.4e-10
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| UPF0054 | 1 | Uncharacterized protein family UPF0054 | 16-147 | 123.9 | 3e-36
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189708918.1 | rRNA maturation RNase YbeY [Streptomyces phaeofaciens] >dbj
| 764 | 1.9e-102 |
| WP_077798791.1 | rRNA maturation RNase YbeY [Streptomyces sp. JHA26]
| 762 | 4.3e-102 |
| WP_108999347.1 | rRNA maturation RNase YbeY [Streptomyces rishiriensis]
| 761 | 6.2e-102 |
| WP_069767699.1 | rRNA maturation RNase YbeY [Streptomyces sp. LUP30]
| 760 | 7.2e-102 |
| WP_190151461.1 | rRNA maturation RNase YbeY [Streptomyces humidus] >dbj
| 759 | 1.2e-101 |
| WP_057574725.1 | MULTISPECIES: rRNA maturation RNase YbeY [unclassified Strep...
| 759 | 1.2e-101 |
| WP_053758213.1 | MULTISPECIES: rRNA maturation RNase YbeY [Streptomyces] >gb
| 758 | 1.5e-101 |
| WP_148013894.1 | rRNA maturation RNase YbeY [Streptomyces sp. me109] >lcl
| 758 | 1.7e-101 |
| WP_125512708.1 | MULTISPECIES: rRNA maturation RNase YbeY [unclassified Strep...
| 758 | 1.8e-101 |
| WP_009301472.1 | rRNA maturation RNase YbeY [Streptomyces ipomoeae] >gb
| 757 | 2.8e-101 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2656 | Seems to have no N-terminal signal seq.
|