| ID | SAVERM_5586
| Type | CDS
|
| From | 6759432
| nt length | 360
|
| To | 6759791
| aa length | 119
|
| Gene |
| pI | 5.22
|
| Definition | putative MmcQ-like protein
| M.W (Da) | 13659
|
| Note | PF04237: Protein of unknown function (DUF419)
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2535 hypothetical protein | 204 | 3.0e-70
|
| sgr | SGR_5005 conserved hypothetical protein | 192 | 7.0e-66
|
| sam | SAM23877_2586 hypothetical protein | 212 | 2.0e-73
|
| scab | SCAB61721 hypothetical protein | 191 | 3.0e-65
|
| sace | SACE_4229 MmcQ-like protein | 89 | 2.0e-25
|
| nfar | nfa13740 hypothetical protein | 56 | 5.5e-10
|
| cglu | gi|19552299 COG2315:Uncharacterized BCR [Corynebacterium glutamicum] | 74 | 1.1e-15
|
| bsub | BG10034 yyaQ; unknown | 48 | 1.1e-07
|
| ecoli | gi|16128562 hypothetical protein b0579 [Escherichia coli K12] | 78 | 1.1e-16
|
| paer | PA1995 [gene=PA1995] [prot=hypothetical protein] [comment=PA1995] | 36 | 8.1e-04
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| YjbR | 1 | YjbR | 11-103 | 100.1 | 7.2e-29
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_143632035.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces sp. IB201...
| 543 | 3.2e-70 |
| WP_190227954.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces umbrinus]...
| 535 | 5.1e-69 |
| WP_030949219.1 | MULTISPECIES: MmcQ/YjbR family DNA-binding protein [Streptom...
| 532 | 1.8e-68 |
| WP_126898484.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces sp. WAC 0...
| 531 | 2.1e-68 |
| WP_200398234.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces sp. ZYC-3...
| 530 | 3.1e-68 |
| WP_189837912.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces umbrinus]...
| 529 | 4.1e-68 |
| WP_055612359.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces phaeochro...
| 529 | 4.8e-68 |
| WP_093866675.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces sp. KS_5]...
| 527 | 7.7e-68 |
| WP_128428409.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces cyaneus]
| 524 | 2.9e-67 |
| WP_200417306.1 | MmcQ/YjbR family DNA-binding protein [Streptomyces sp. Y2F8-...
| 523 | 3.7e-67 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1695 | Seems to have no N-terminal signal seq.
|